PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_90230780.1 Alkaloid H6H low borderline
Cclescaffold_90230810.1 Alkaloid H6H low borderline
Cclescaffold_90230820.1 Alkaloid H6H medium borderline
Cclescaffold_90230890.1 Alkaloid H6H medium borderline
Cclescaffold_90230960.1 Alkaloid H6H low borderline
Cclescaffold_90230980.1 Alkaloid H6H medium borderline
Cclescaffold_90231080.1 Alkaloid H6H low borderline
Cclescaffold_90231090.1 Alkaloid H6H medium pass
Cclescaffold_90231150.1 Alkaloid H6H medium borderline
Cclescaffold_90231200.1 Alkaloid H6H medium borderline
Cclescaffold_90233800.1 Alkaloid H6H medium borderline
Cclescaffold_90234310.2 Alkaloid H6H medium borderline
Cclescaffold_90239970.1 Alkaloid H6H medium pass
Cclescaffold_90240520.1 Alkaloid H6H medium borderline
Cclescaffold_90240590.1 Alkaloid H6H medium borderline
Cclescaffold_20033490.1 Alkaloid IO low borderline
Cclescaffold_20033510.1 Alkaloid IO low borderline
Cclescaffold_30063120.1 Alkaloid IO low borderline
Cclescaffold_30073850.1 Alkaloid IO medium borderline
Cclescaffold_30087540.1 Alkaloid IO medium borderline
Cclescaffold_30097980.1 Alkaloid IO medium borderline
Cclescaffold_40104130.1 Alkaloid IO low borderline
Cclescaffold_40105400.1 Alkaloid IO medium borderline
Cclescaffold_40111010.1 Alkaloid IO medium borderline
Cclescaffold_40116350.1 Alkaloid IO medium borderline
Cclescaffold_40120910.1 Alkaloid IO medium borderline
Cclescaffold_40127730.1 Alkaloid IO medium borderline
Cclescaffold_50138470.1 Alkaloid IO low borderline
Cclescaffold_50138480.1 Alkaloid IO low borderline
Cclescaffold_50138510.1 Alkaloid IO medium borderline
Cclescaffold_50151590.1 Alkaloid IO medium borderline
Cclescaffold_60172770.1 Alkaloid IO medium borderline
Cclescaffold_60172780.1 Alkaloid IO medium borderline
Cclescaffold_70182540.1 Alkaloid IO low borderline
Cclescaffold_70182540.2 Alkaloid IO low borderline
Cclescaffold_70183300.1 Alkaloid IO medium borderline
Cclescaffold_70196450.1 Alkaloid IO medium borderline
Cclescaffold_70196490.1 Alkaloid IO medium borderline
Cclescaffold_70197180.1 Alkaloid IO medium borderline
Cclescaffold_70197210.1 Alkaloid IO medium borderline
Cclescaffold_80206840.1 Alkaloid IO low borderline
Cclescaffold_80220190.1 Alkaloid IO medium borderline
Cclescaffold_90233590.1 Alkaloid IO medium borderline
Cclescaffold_130025310.1 Alkaloid ISY medium pass
Cclescaffold_30086360.1 Alkaloid ISY medium pass
Cclescaffold_30086370.1 Alkaloid ISY medium pass
Cclescaffold_30086380.1 Alkaloid ISY medium pass
Cclescaffold_50136800.1 Alkaloid ISY medium pass
Cclescaffold_50136910.1 Alkaloid ISY medium pass
Cclescaffold_50136920.1 Alkaloid ISY medium pass