PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_50136930.1 Alkaloid ISY medium pass
Cclescaffold_50136940.1 Alkaloid ISY medium pass
Cclescaffold_50136950.1 Alkaloid ISY medium pass
Cclescaffold_50136960.1 Alkaloid ISY high pass
Cclescaffold_50136960.2 Alkaloid ISY high pass
Cclescaffold_50136960.3 Alkaloid ISY high pass
Cclescaffold_50141490.1 Alkaloid ISY medium pass
Cclescaffold_50141520.1 Alkaloid ISY medium pass
Cclescaffold_50141540.1 Alkaloid ISY medium pass
Cclescaffold_50145160.1 Alkaloid ISY medium pass
Cclescaffold_50145170.1 Alkaloid ISY medium pass
Cclescaffold_80220810.1 Alkaloid ISY medium pass
Cclescaffold_90232370.1 Alkaloid ISY high pass
Cclescaffold_10016180.1 Alkaloid LAMT medium pass
Cclescaffold_10016180.2 Alkaloid LAMT medium pass
Cclescaffold_20025680.1 Alkaloid LAMT medium borderline
Cclescaffold_20032550.1 Alkaloid LAMT medium borderline
Cclescaffold_30067250.1 Alkaloid LAMT low borderline
Cclescaffold_30062870.1 Alkaloid MPO medium pass
Cclescaffold_30066220.1 Alkaloid MPO medium pass
Cclescaffold_40122470.1 Alkaloid MPO high pass
Cclescaffold_40122470.2 Alkaloid MPO high pass
Cclescaffold_40122470.3 Alkaloid MPO high pass
Cclescaffold_90226590.1 Alkaloid MPO medium pass
Cclescaffold_90226600.1 Alkaloid MPO medium pass
Cclescaffold_90226630.1 Alkaloid MPO high pass
Cclescaffold_90226640.1 Alkaloid MPO medium pass
Cclescaffold_90226650.1 Alkaloid MPO low borderline
Cclescaffold_90226660.1 Alkaloid MPO medium pass
Cclescaffold_10007930.1 Alkaloid NCS medium borderline
Cclescaffold_10007940.1 Alkaloid NCS medium borderline
Cclescaffold_10021740.2 Alkaloid NCS medium borderline
Cclescaffold_20044890.1 Alkaloid NCS medium borderline
Cclescaffold_20056420.1 Alkaloid NCS medium borderline
Cclescaffold_30087780.1 Alkaloid NCS medium pass
Cclescaffold_40104290.3 Alkaloid NCS medium borderline
Cclescaffold_40111820.1 Alkaloid NCS medium borderline
Cclescaffold_60160620.1 Alkaloid NCS medium pass
Cclescaffold_70187540.1 Alkaloid NCS medium borderline
Cclescaffold_70194960.1 Alkaloid NCS medium borderline
Cclescaffold_90223620.1 Alkaloid NCS low borderline
Cclescaffold_90223680.1 Alkaloid NCS low borderline
Cclescaffold_90223750.1 Alkaloid NCS low borderline
Cclescaffold_90225370.1 Alkaloid NCS low borderline
Cclescaffold_10000050.1 Alkaloid NMT medium pass
Cclescaffold_10001850.1 Alkaloid NMT low borderline
Cclescaffold_10006160.1 Alkaloid NMT medium pass
Cclescaffold_10008750.1 Alkaloid NMT medium pass
Cclescaffold_10008750.2 Alkaloid NMT medium pass
Cclescaffold_10010210.1 Alkaloid NMT medium borderline