PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_50157600.3 Alkaloid NMT medium pass
Cclescaffold_50157600.4 Alkaloid NMT medium pass
Cclescaffold_50157600.5 Alkaloid NMT medium pass
Cclescaffold_50157600.6 Alkaloid NMT medium pass
Cclescaffold_50157600.7 Alkaloid NMT medium pass
Cclescaffold_50157600.8 Alkaloid NMT medium pass
Cclescaffold_60159750.1 Alkaloid NMT low borderline
Cclescaffold_60159770.1 Alkaloid NMT medium borderline
Cclescaffold_60159780.1 Alkaloid NMT medium borderline
Cclescaffold_60173440.1 Alkaloid NMT medium pass
Cclescaffold_60178230.1 Alkaloid NMT medium borderline
Cclescaffold_70181010.1 Alkaloid NMT medium pass
Cclescaffold_70181220.1 Alkaloid NMT medium borderline
Cclescaffold_70183050.1 Alkaloid NMT medium pass
Cclescaffold_70183050.2 Alkaloid NMT medium pass
Cclescaffold_70183050.3 Alkaloid NMT medium pass
Cclescaffold_70183050.4 Alkaloid NMT medium pass
Cclescaffold_70183050.5 Alkaloid NMT medium pass
Cclescaffold_70184090.1 Alkaloid NMT medium pass
Cclescaffold_70196250.1 Alkaloid NMT low borderline
Cclescaffold_70196250.2 Alkaloid NMT low borderline
Cclescaffold_70196250.3 Alkaloid NMT low borderline
Cclescaffold_70196250.4 Alkaloid NMT low borderline
Cclescaffold_70196340.1 Alkaloid NMT medium pass
Cclescaffold_70197710.1 Alkaloid NMT medium pass
Cclescaffold_70197710.2 Alkaloid NMT medium pass
Cclescaffold_70199280.1 Alkaloid NMT medium pass
Cclescaffold_70199290.1 Alkaloid NMT medium pass
Cclescaffold_70199300.1 Alkaloid NMT medium pass
Cclescaffold_7590201150.1 Alkaloid NMT medium pass
Cclescaffold_80202490.1 Alkaloid NMT low borderline
Cclescaffold_80212220.1 Alkaloid NMT medium borderline
Cclescaffold_80216200.1 Alkaloid NMT low borderline
Cclescaffold_80216500.1 Alkaloid NMT low borderline
Cclescaffold_90224510.1 Alkaloid NMT medium pass
Cclescaffold_90224510.2 Alkaloid NMT medium pass
Cclescaffold_90229810.1 Alkaloid NMT medium borderline
Cclescaffold_90229840.1 Alkaloid NMT medium borderline
Cclescaffold_90230340.1 Alkaloid NMT medium pass
Cclescaffold_90233500.1 Alkaloid NMT medium borderline
Cclescaffold_90235620.1 Alkaloid NMT medium borderline
Cclescaffold_90238990.1 Alkaloid NMT medium pass
Cclescaffold_30084160.1 Alkaloid ODC medium pass
Cclescaffold_40111080.1 Alkaloid ODC medium pass
Cclescaffold_80219760.1 Alkaloid ODC low borderline
Cclescaffold_10019750.1 Alkaloid PMT medium pass
Cclescaffold_20031090.1 Alkaloid PMT low borderline
Cclescaffold_20031100.1 Alkaloid PMT medium pass
Cclescaffold_20031120.1 Alkaloid PMT low borderline
Cclescaffold_20031130.1 Alkaloid PMT medium pass