PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_20031160.1 Alkaloid PMT medium pass
Cclescaffold_20034280.1 Alkaloid PMT low borderline
Cclescaffold_20036570.1 Alkaloid PMT medium pass
Cclescaffold_20041910.1 Alkaloid PMT low borderline
Cclescaffold_30062070.1 Alkaloid PMT medium borderline
Cclescaffold_30096940.1 Alkaloid PMT medium pass
Cclescaffold_40104470.1 Alkaloid PMT low borderline
Cclescaffold_40106220.1 Alkaloid PMT medium pass
Cclescaffold_40112640.1 Alkaloid PMT medium pass
Cclescaffold_40116460.1 Alkaloid PMT medium pass
Cclescaffold_40123240.1 Alkaloid PMT medium borderline
Cclescaffold_40123240.2 Alkaloid PMT medium borderline
Cclescaffold_50140530.1 Alkaloid PMT low borderline
Cclescaffold_50154710.1 Alkaloid PMT low borderline
Cclescaffold_70191730.1 Alkaloid PMT medium pass
Cclescaffold_70191760.1 Alkaloid PMT medium pass
Cclescaffold_70196560.1 Alkaloid PMT medium pass
Cclescaffold_90226580.1 Alkaloid PMT medium pass
Cclescaffold_90226580.2 Alkaloid PMT medium pass
Cclescaffold_90244190.1 Alkaloid PMT medium borderline
Cclescaffold_10002860.1 Alkaloid PYKS low borderline
Cclescaffold_10006290.1 Alkaloid PYKS low borderline
Cclescaffold_10006290.2 Alkaloid PYKS low borderline
Cclescaffold_10019370.1 Alkaloid PYKS low borderline
Cclescaffold_10020680.1 Alkaloid PYKS low borderline
Cclescaffold_20035740.1 Alkaloid PYKS high pass
Cclescaffold_20035740.2 Alkaloid PYKS high pass
Cclescaffold_30065950.1 Alkaloid PYKS low borderline
Cclescaffold_30097850.1 Alkaloid PYKS low borderline
Cclescaffold_30097850.2 Alkaloid PYKS low borderline
Cclescaffold_30101690.1 Alkaloid PYKS high pass
Cclescaffold_40107150.1 Alkaloid PYKS low borderline
Cclescaffold_40118390.1 Alkaloid PYKS low borderline
Cclescaffold_50132160.1 Alkaloid PYKS low borderline
Cclescaffold_50143460.1 Alkaloid PYKS low borderline
Cclescaffold_50148740.1 Alkaloid PYKS high pass
Cclescaffold_50148750.1 Alkaloid PYKS high pass
Cclescaffold_50148750.2 Alkaloid PYKS high pass
Cclescaffold_50149770.1 Alkaloid PYKS high pass
Cclescaffold_50150130.1 Alkaloid PYKS high pass
Cclescaffold_50150160.1 Alkaloid PYKS high pass
Cclescaffold_50154370.1 Alkaloid PYKS low borderline
Cclescaffold_60160090.1 Alkaloid PYKS low borderline
Cclescaffold_70199310.1 Alkaloid PYKS high pass
Cclescaffold_70199330.1 Alkaloid PYKS high pass
Cclescaffold_80207670.1 Alkaloid PYKS low borderline
Cclescaffold_80209790.1 Alkaloid PYKS high pass
Cclescaffold_80210900.1 Alkaloid PYKS high pass
Cclescaffold_80210910.1 Alkaloid PYKS high pass
Cclescaffold_80210930.1 Alkaloid PYKS high pass