PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Cclescaffold_90230380.1 Alkaloid 16OMT medium borderline
Cclescaffold_90232520.1 Alkaloid 16OMT medium borderline
Cclescaffold_90232540.1 Alkaloid 16OMT medium borderline
Cclescaffold_90232550.1 Alkaloid 16OMT medium borderline
Cclescaffold_90234510.1 Alkaloid 16OMT medium borderline
Cclescaffold_90235020.1 Alkaloid 16OMT medium borderline
Cclescaffold_90235030.1 Alkaloid 16OMT medium borderline
Cclescaffold_90235040.1 Alkaloid 16OMT medium borderline
Cclescaffold_90232560.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
Cclescaffold_90235050.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
Cclescaffold_10006700.1 Alkaloid 7DLGT low borderline
Cclescaffold_10009410.1 Alkaloid 7DLGT low borderline
Cclescaffold_10011320.1 Alkaloid 7DLGT low borderline
Cclescaffold_10022640.1 Alkaloid 7DLGT low borderline
Cclescaffold_20028930.1 Alkaloid 7DLGT low borderline
Cclescaffold_20028940.1 Alkaloid 7DLGT low borderline
Cclescaffold_20028950.1 Alkaloid 7DLGT low borderline
Cclescaffold_20028960.1 Alkaloid 7DLGT low borderline
Cclescaffold_20028970.1 Alkaloid 7DLGT low borderline
Cclescaffold_20029000.1 Alkaloid 7DLGT low borderline
Cclescaffold_20029010.1 Alkaloid 7DLGT low borderline
Cclescaffold_20029020.1 Alkaloid 7DLGT low borderline
Cclescaffold_20029030.1 Alkaloid 7DLGT medium pass
Cclescaffold_20029050.1 Alkaloid 7DLGT low borderline
Cclescaffold_20032500.1 Alkaloid 7DLGT medium pass
Cclescaffold_20032510.1 Alkaloid 7DLGT low borderline
Cclescaffold_20036230.1 Alkaloid 7DLGT medium pass
Cclescaffold_20038060.1 Alkaloid 7DLGT medium pass
Cclescaffold_20038070.1 Alkaloid 7DLGT low borderline
Cclescaffold_20038080.1 Alkaloid 7DLGT medium pass
Cclescaffold_20043050.1 Alkaloid 7DLGT medium pass
Cclescaffold_20043060.1 Alkaloid 7DLGT medium pass
Cclescaffold_20043070.1 Alkaloid 7DLGT low borderline
Cclescaffold_20043080.1 Alkaloid 7DLGT high pass
Cclescaffold_20043100.1 Alkaloid 7DLGT low borderline
Cclescaffold_20043110.1 Alkaloid 7DLGT high pass
Cclescaffold_20043120.1 Alkaloid 7DLGT medium pass
Cclescaffold_20043130.1 Alkaloid 7DLGT low borderline
Cclescaffold_20047940.1 Alkaloid 7DLGT medium pass
Cclescaffold_20048670.1 Alkaloid 7DLGT medium pass
Cclescaffold_20053570.1 Alkaloid 7DLGT low borderline
Cclescaffold_20053580.1 Alkaloid 7DLGT low borderline
Cclescaffold_30061890.1 Alkaloid 7DLGT low borderline
Cclescaffold_30068170.1 Alkaloid 7DLGT low borderline
Cclescaffold_30068380.1 Alkaloid 7DLGT low borderline
Cclescaffold_30068390.1 Alkaloid 7DLGT high pass
Cclescaffold_30068400.1 Alkaloid 7DLGT medium pass
Cclescaffold_30068410.1 Alkaloid 7DLGT medium pass
Cclescaffold_30068420.1 Alkaloid 7DLGT high pass
Cclescaffold_30069260.1 Alkaloid 7DLGT low borderline