PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Cclescaffold_90242420.2 Flavonoid 4CL medium pass
Cclescaffold_10013870.1 Flavonoid ANR medium borderline
Cclescaffold_20030170.1 Flavonoid ANR medium borderline
Cclescaffold_20030180.1 Flavonoid ANR medium borderline
Cclescaffold_20032840.1 Flavonoid ANR low borderline
Cclescaffold_20051590.1 Flavonoid ANR medium borderline
Cclescaffold_30076430.1 Flavonoid ANR medium borderline
Cclescaffold_30087680.1 Flavonoid ANR low borderline
Cclescaffold_30087680.2 Flavonoid ANR low borderline
Cclescaffold_30101020.1 Flavonoid ANR medium borderline
Cclescaffold_30101020.2 Flavonoid ANR medium borderline
Cclescaffold_30101020.3 Flavonoid ANR medium borderline
Cclescaffold_40118410.1 Flavonoid ANR medium borderline
Cclescaffold_40125140.1 Flavonoid ANR medium borderline
Cclescaffold_40126610.1 Flavonoid ANR medium borderline
Cclescaffold_40126620.1 Flavonoid ANR medium borderline
Cclescaffold_40126630.2 Flavonoid ANR medium borderline
Cclescaffold_50127950.1 Flavonoid ANR medium borderline
Cclescaffold_50127950.2 Flavonoid ANR medium borderline
Cclescaffold_50127950.3 Flavonoid ANR medium borderline
Cclescaffold_50128120.1 Flavonoid ANR medium borderline
Cclescaffold_50153200.1 Flavonoid ANR low borderline
Cclescaffold_50154570.1 Flavonoid ANR medium borderline
Cclescaffold_80201180.1 Flavonoid ANR medium borderline
Cclescaffold_80210890.1 Flavonoid ANR medium borderline
Cclescaffold_80210950.1 Flavonoid ANR medium borderline
Cclescaffold_80221270.1 Flavonoid ANR medium borderline
Cclescaffold_10014130.1 Flavonoid ANS/LDOX medium borderline
Cclescaffold_10014170.1 Flavonoid ANS/LDOX medium borderline
Cclescaffold_10017680.1 Flavonoid ANS/LDOX medium pass
Cclescaffold_20055580.1 Flavonoid ANS/LDOX medium borderline
Cclescaffold_30080740.1 Flavonoid ANS/LDOX medium borderline
Cclescaffold_30096540.1 Flavonoid ANS/LDOX medium borderline
Cclescaffold_50134120.1 Flavonoid ANS/LDOX medium borderline
Cclescaffold_50139950.1 Flavonoid ANS/LDOX medium borderline
Cclescaffold_90230780.1 Flavonoid ANS/LDOX medium borderline
Cclescaffold_90230960.1 Flavonoid ANS/LDOX medium borderline
Cclescaffold_20029670.1 Flavonoid C4H low borderline
Cclescaffold_40111010.1 Flavonoid C4H medium borderline
Cclescaffold_40119810.1 Flavonoid C4H medium borderline
Cclescaffold_40119840.2 Flavonoid C4H medium borderline
Cclescaffold_50133580.1 Flavonoid C4H medium borderline
Cclescaffold_50138540.1 Flavonoid C4H low borderline
Cclescaffold_80210490.1 Flavonoid C4H low borderline
Cclescaffold_90240950.1 Flavonoid C4H low borderline
Cclescaffold_10019520.1 Flavonoid CHI low borderline
Cclescaffold_20033530.1 Flavonoid CHI medium pass
Cclescaffold_40105520.1 Flavonoid CHI medium pass
Cclescaffold_40105520.2 Flavonoid CHI medium pass
Cclescaffold_40105520.3 Flavonoid CHI medium pass