PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Cclescaffold_90242420.2 Rosmarinic Acid 4CL medium pass
Cclescaffold_10000310.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10005240.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10005600.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10006190.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10009110.1 Rosmarinic Acid C4H medium pass
Cclescaffold_10009110.2 Rosmarinic Acid C4H medium pass
Cclescaffold_10009110.3 Rosmarinic Acid C4H medium pass
Cclescaffold_10009110.4 Rosmarinic Acid C4H medium pass
Cclescaffold_10009120.1 Rosmarinic Acid C4H medium pass
Cclescaffold_10010610.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10014990.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10016680.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10016690.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10016700.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10016710.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10016720.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10016730.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10016750.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10016760.1 Rosmarinic Acid C4H medium pass
Cclescaffold_10016770.1 Rosmarinic Acid C4H medium pass
Cclescaffold_10018400.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10019690.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10021000.1 Rosmarinic Acid C4H medium pass
Cclescaffold_10022820.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20025930.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20025940.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20027670.1 Rosmarinic Acid C4H medium pass
Cclescaffold_20027710.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20027740.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20027760.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20027780.1 Rosmarinic Acid C4H medium pass
Cclescaffold_20027790.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20027800.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20027820.1 Rosmarinic Acid C4H medium pass
Cclescaffold_20029180.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20029190.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20029200.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20029210.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20029220.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20029230.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20029240.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20029250.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20029260.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20029330.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20029660.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20029670.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20031450.1 Rosmarinic Acid C4H medium pass
Cclescaffold_20033840.1 Rosmarinic Acid C4H low borderline
Cclescaffold_20036990.1 Rosmarinic Acid C4H low borderline