Citrus clementina (citrus_clementina)
Imported from atlas release summary for Citrus clementina.
2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4984
Family-Level Calls
C4H
6.4%
C3'H/CYP98A
6.4%
BAHD
5.54%
IFS
4.23%
CYP76
4.19%
T3O
3.85%
UGT
3.69%
7DLGT
3.39%
Other Families
62.3%
More Families (95)
UFGT
169
3.39%
F3H
161
3.23%
4CL
153
3.07%
NMT
148
2.97%
POD
125
2.51%
DWF4/CYP90B1
114
2.29%
BR6OX2/CYP85A2
113
2.27%
CODM/T6ODM
110
2.21%
COMT
107
2.15%
STR
100
2.01%
CYP71
89
1.79%
F3'H/CYP75B
86
1.73%
TRI/TRII
75
1.5%
IFR
71
1.42%
H6H
64
1.28%
CYP90D1
60
1.2%
16OMT
58
1.16%
SMT1/SMT2/SMT3
56
1.12%
BBE
54
1.08%
CAD
53
1.06%
TAT
49
0.98%
SGD
47
0.94%
CAS
47
0.94%
G8O/G8H
43
0.86%
T16H
41
0.82%
HCT
41
0.82%
PYKS
38
0.76%
GS
36
0.72%
CSE
36
0.72%
COR
31
0.62%
8HGO
29
0.58%
RAS
29
0.58%
IO
28
0.56%
ANR
26
0.52%
F3'5'H/CYP75A
26
0.52%
SLS
25
0.5%
PMT
25
0.5%
PAL
24
0.48%
CCoAOMT
24
0.48%
LAC
24
0.48%
FNS
23
0.46%
F5H/CYP84A
23
0.46%
CPD/CYP90A1
23
0.46%
7DLH
21
0.42%
CCR
21
0.42%
ISY
20
0.4%
GGPPS
18
0.36%
CHS
17
0.34%
CYP51G1
16
0.32%
CNMT
15
0.3%
NCS
15
0.3%
GES
12
0.24%
FPPS
12
0.24%
TPS
12
0.24%
MPO
11
0.22%
SQE
11
0.22%
SQS/FDFT1
11
0.22%
TYDC_DDC
10
0.2%
ANS/LDOX
10
0.2%
DFR
10
0.2%
BR6OX1/CYP85A1
10
0.2%
AACT
10
0.2%
CYP80B1
9
0.18%
HYD1
9
0.18%
CPR
8
0.16%
HPPR
8
0.16%
MVK
8
0.16%
CYP719
7
0.14%
HMGS
7
0.14%
CHI
6
0.12%
DXS
6
0.12%
DXR
6
0.12%
LAMT
5
0.1%
ADC
5
0.1%
SMO1/SMO2
5
0.1%
MVD
5
0.1%
MCT/IspD
5
0.1%
HDR/IspH
5
0.1%
ODC
3
0.06%
TDC
3
0.06%
ROT3/CYP90C1
3
0.06%
MDS/IspF
3
0.06%
HMGR
3
0.06%
HDS/IspG
3
0.06%
6OMT_4OMT_SOMT
2
0.04%
CPI1
2
0.04%
DWF7
2
0.04%
DET2
2
0.04%
DWF1
2
0.04%
PMK
2
0.04%
DWF5
1
0.02%
FK
1
0.02%
CMK/IspE
1
0.02%
IDI
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 543 | 19 | BAHD (230) | View species results |
| Alkaloid pathway | 494 | 23 | 7DLGT (91) | View species results |
| Phenylpropanoid pathway | 395 | 11 | POD (123) | View species results |
| Flavonoid pathway | 251 | 9 | UFGT (153) | View species results |
| Rosmarinic acid pathway | 190 | 7 | C4H (77) | View species results |
| Steroid pathway | 118 | 11 | CAS (43) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1987 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 346 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cclescaffold_20045780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30065610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30069430.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_30071140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30071870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30073050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30073060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30074000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30081180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30085940.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40106120.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_40107230.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_40109340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_40110520.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40110890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_40111210.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40111230.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40111240.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40111260.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40111280.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40111290.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40111310.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40119080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_40119280.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40119300.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_50134290.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_50151770.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60158030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60158240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60158250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60162820.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60162870.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60162880.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60162890.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60170460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60170460.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60170460.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60172390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60172400.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60172410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60172410.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60176770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_70180130.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Cclescaffold_70185960.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_70186950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_70186960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_70190690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_70190690.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_70192490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_70192500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |