PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_40105370.1 Alkaloid T16H medium borderline
Cclescaffold_40105380.1 Alkaloid T16H medium pass
Cclescaffold_40105380.2 Alkaloid T16H medium pass
Cclescaffold_40105420.1 Alkaloid T16H medium pass
Cclescaffold_40105440.1 Alkaloid T16H medium borderline
Cclescaffold_40116330.1 Alkaloid T16H medium borderline
Cclescaffold_40116340.1 Alkaloid T16H medium borderline
Cclescaffold_40116360.1 Alkaloid T16H medium borderline
Cclescaffold_40122050.1 Alkaloid T16H low borderline
Cclescaffold_50129820.1 Alkaloid T16H medium borderline
Cclescaffold_50130530.1 Alkaloid T16H medium pass
Cclescaffold_50133580.1 Alkaloid T16H medium borderline
Cclescaffold_50138420.1 Alkaloid T16H medium borderline
Cclescaffold_50138430.1 Alkaloid T16H medium borderline
Cclescaffold_50138490.1 Alkaloid T16H medium borderline
Cclescaffold_50138530.1 Alkaloid T16H medium borderline
Cclescaffold_50153020.1 Alkaloid T16H medium borderline
Cclescaffold_80210880.2 Alkaloid T16H medium borderline
Cclescaffold_80221590.1 Alkaloid T16H medium borderline
Cclescaffold_90238900.1 Alkaloid T16H medium borderline
Cclescaffold_90240980.1 Alkaloid T16H medium borderline
Cclescaffold_10000310.1 Alkaloid T3O low borderline
Cclescaffold_10005600.1 Alkaloid T3O low borderline
Cclescaffold_10009110.1 Alkaloid T3O medium borderline
Cclescaffold_10009110.2 Alkaloid T3O medium borderline
Cclescaffold_10009110.3 Alkaloid T3O medium borderline
Cclescaffold_10009110.4 Alkaloid T3O medium borderline
Cclescaffold_10009120.1 Alkaloid T3O medium borderline
Cclescaffold_10010610.1 Alkaloid T3O medium borderline
Cclescaffold_10014030.1 Alkaloid T3O low borderline
Cclescaffold_10014990.1 Alkaloid T3O medium pass
Cclescaffold_10016680.1 Alkaloid T3O medium borderline
Cclescaffold_10016690.1 Alkaloid T3O medium borderline
Cclescaffold_10016700.1 Alkaloid T3O medium borderline
Cclescaffold_10016710.1 Alkaloid T3O medium borderline
Cclescaffold_10016730.1 Alkaloid T3O medium borderline
Cclescaffold_10016760.1 Alkaloid T3O medium borderline
Cclescaffold_10016770.1 Alkaloid T3O medium borderline
Cclescaffold_10018400.1 Alkaloid T3O medium borderline
Cclescaffold_20027670.1 Alkaloid T3O medium borderline
Cclescaffold_20027710.1 Alkaloid T3O medium borderline
Cclescaffold_20027740.1 Alkaloid T3O medium borderline
Cclescaffold_20027760.1 Alkaloid T3O medium borderline
Cclescaffold_20027780.1 Alkaloid T3O medium borderline
Cclescaffold_20027790.1 Alkaloid T3O medium borderline
Cclescaffold_20027800.1 Alkaloid T3O medium borderline
Cclescaffold_20027820.1 Alkaloid T3O medium borderline
Cclescaffold_20029180.1 Alkaloid T3O medium borderline
Cclescaffold_20029240.1 Alkaloid T3O medium borderline
Cclescaffold_20029250.1 Alkaloid T3O medium borderline