PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_90244360.1 Flavonoid F3H medium borderline
Cclescaffold_90244380.1 Flavonoid F3H medium borderline
Cclescaffold_10005240.1 Flavonoid FNS medium borderline
Cclescaffold_10009380.1 Flavonoid FNS low borderline
Cclescaffold_20027670.1 Flavonoid FNS medium borderline
Cclescaffold_30058360.1 Flavonoid FNS medium borderline
Cclescaffold_30063180.1 Flavonoid FNS medium borderline
Cclescaffold_30076750.1 Flavonoid FNS medium borderline
Cclescaffold_30087540.1 Flavonoid FNS medium borderline
Cclescaffold_30088280.1 Flavonoid FNS medium borderline
Cclescaffold_30089860.2 Flavonoid FNS medium borderline
Cclescaffold_40105380.1 Flavonoid FNS medium borderline
Cclescaffold_40105380.2 Flavonoid FNS medium borderline
Cclescaffold_40116300.1 Flavonoid FNS medium borderline
Cclescaffold_40122050.1 Flavonoid FNS low borderline
Cclescaffold_50127940.1 Flavonoid FNS medium borderline
Cclescaffold_50129810.1 Flavonoid FNS medium borderline
Cclescaffold_50129850.1 Flavonoid FNS medium borderline
Cclescaffold_50145020.1 Flavonoid FNS medium borderline
Cclescaffold_60177390.1 Flavonoid FNS medium borderline
Cclescaffold_70181670.1 Flavonoid FNS medium borderline
Cclescaffold_70188490.1 Flavonoid FNS low borderline
Cclescaffold_90233590.1 Flavonoid FNS medium borderline
Cclescaffold_90238910.1 Flavonoid FNS medium borderline
Cclescaffold_90238920.1 Flavonoid FNS medium borderline
Cclescaffold_10000780.1 Flavonoid IFR low borderline
Cclescaffold_10000950.1 Flavonoid IFR low borderline
Cclescaffold_10000950.2 Flavonoid IFR low borderline
Cclescaffold_10000950.3 Flavonoid IFR low borderline
Cclescaffold_10000950.4 Flavonoid IFR low borderline
Cclescaffold_10023390.1 Flavonoid IFR low borderline
Cclescaffold_20030950.1 Flavonoid IFR low borderline
Cclescaffold_20030950.2 Flavonoid IFR low borderline
Cclescaffold_20030950.3 Flavonoid IFR low borderline
Cclescaffold_20054460.1 Flavonoid IFR low borderline
Cclescaffold_20055380.1 Flavonoid IFR low borderline
Cclescaffold_23550057690.1 Flavonoid IFR medium pass
Cclescaffold_30059070.1 Flavonoid IFR low borderline
Cclescaffold_30074110.1 Flavonoid IFR high pass
Cclescaffold_30074120.1 Flavonoid IFR low borderline
Cclescaffold_30074130.1 Flavonoid IFR high pass
Cclescaffold_30074140.1 Flavonoid IFR high pass
Cclescaffold_30074140.2 Flavonoid IFR high pass
Cclescaffold_30074150.1 Flavonoid IFR medium pass
Cclescaffold_30074160.1 Flavonoid IFR high pass
Cclescaffold_30074170.1 Flavonoid IFR low borderline
Cclescaffold_30074190.1 Flavonoid IFR high pass
Cclescaffold_30091010.1 Flavonoid IFR low borderline
Cclescaffold_30091010.2 Flavonoid IFR low borderline
Cclescaffold_30095100.1 Flavonoid IFR low borderline