PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_80211610.1 Flavonoid UFGT medium pass
Cclescaffold_80211620.1 Flavonoid UFGT medium pass
Cclescaffold_80211630.1 Flavonoid UFGT medium pass
Cclescaffold_80211640.1 Flavonoid UFGT medium pass
Cclescaffold_80211660.1 Flavonoid UFGT high pass
Cclescaffold_80211670.1 Flavonoid UFGT high pass
Cclescaffold_80211690.1 Flavonoid UFGT high pass
Cclescaffold_80212320.1 Flavonoid UFGT high pass
Cclescaffold_80215390.1 Flavonoid UFGT low borderline
Cclescaffold_80215400.1 Flavonoid UFGT medium pass
Cclescaffold_80215410.1 Flavonoid UFGT high pass
Cclescaffold_80216650.1 Flavonoid UFGT medium pass
Cclescaffold_80218930.1 Flavonoid UFGT medium pass
Cclescaffold_80218940.1 Flavonoid UFGT high pass
Cclescaffold_80219870.1 Flavonoid UFGT medium pass
Cclescaffold_80219880.1 Flavonoid UFGT high pass
Cclescaffold_80219890.1 Flavonoid UFGT medium pass
Cclescaffold_80220100.1 Flavonoid UFGT high pass
Cclescaffold_80220130.1 Flavonoid UFGT high pass
Cclescaffold_80220180.1 Flavonoid UFGT high pass
Cclescaffold_80221410.1 Flavonoid UFGT low borderline
Cclescaffold_80221420.1 Flavonoid UFGT medium pass
Cclescaffold_80221420.2 Flavonoid UFGT medium pass
Cclescaffold_80221430.1 Flavonoid UFGT medium pass
Cclescaffold_80221450.1 Flavonoid UFGT low borderline
Cclescaffold_90235270.1 Flavonoid UFGT high pass
Cclescaffold_90235380.1 Flavonoid UFGT medium pass
Cclescaffold_90237290.1 Flavonoid UFGT high pass
Cclescaffold_90237520.1 Flavonoid UFGT medium pass
Cclescaffold_90241730.1 Flavonoid UFGT medium pass
Cclescaffold_90243470.1 Flavonoid UFGT medium pass
Cclescaffold_90243520.1 Flavonoid UFGT medium pass
Cclescaffold_90243530.1 Flavonoid UFGT high pass
Cclescaffold_90243550.1 Flavonoid UFGT medium pass
Cclescaffold_10009600.1 Phenylpropanoid 4CL medium pass
Cclescaffold_10022290.1 Phenylpropanoid 4CL medium pass
Cclescaffold_20035320.1 Phenylpropanoid 4CL low borderline
Cclescaffold_20035320.2 Phenylpropanoid 4CL low borderline
Cclescaffold_20037420.1 Phenylpropanoid 4CL medium pass
Cclescaffold_20042360.1 Phenylpropanoid 4CL low borderline
Cclescaffold_20050030.1 Phenylpropanoid 4CL low borderline
Cclescaffold_30059230.1 Phenylpropanoid 4CL low borderline
Cclescaffold_30063920.1 Phenylpropanoid 4CL medium pass
Cclescaffold_30063930.1 Phenylpropanoid 4CL medium pass
Cclescaffold_30087390.1 Phenylpropanoid 4CL medium pass
Cclescaffold_30087390.2 Phenylpropanoid 4CL medium pass
Cclescaffold_30096490.1 Phenylpropanoid 4CL low borderline
Cclescaffold_30096490.2 Phenylpropanoid 4CL low borderline
Cclescaffold_40109980.1 Phenylpropanoid 4CL medium pass
Cclescaffold_40120760.1 Phenylpropanoid 4CL medium pass