PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Cclescaffold_80211690.1 Alkaloid 7DLGT medium pass
Cclescaffold_80212320.1 Alkaloid 7DLGT high pass
Cclescaffold_80215390.1 Alkaloid 7DLGT low borderline
Cclescaffold_80215400.1 Alkaloid 7DLGT low borderline
Cclescaffold_80215410.1 Alkaloid 7DLGT low borderline
Cclescaffold_80216650.1 Alkaloid 7DLGT medium pass
Cclescaffold_80218930.1 Alkaloid 7DLGT medium pass
Cclescaffold_80218940.1 Alkaloid 7DLGT medium pass
Cclescaffold_80219870.1 Alkaloid 7DLGT high pass
Cclescaffold_80219880.1 Alkaloid 7DLGT high pass
Cclescaffold_80219890.1 Alkaloid 7DLGT high pass
Cclescaffold_80220100.1 Alkaloid 7DLGT high pass
Cclescaffold_80220130.1 Alkaloid 7DLGT high pass
Cclescaffold_80220180.1 Alkaloid 7DLGT high pass
Cclescaffold_80221410.1 Alkaloid 7DLGT medium pass
Cclescaffold_80221420.1 Alkaloid 7DLGT low borderline
Cclescaffold_80221420.2 Alkaloid 7DLGT low borderline
Cclescaffold_80221430.1 Alkaloid 7DLGT low borderline
Cclescaffold_80221450.1 Alkaloid 7DLGT low borderline
Cclescaffold_90235270.1 Alkaloid 7DLGT low borderline
Cclescaffold_90235380.1 Alkaloid 7DLGT low borderline
Cclescaffold_90237280.1 Alkaloid 7DLGT medium pass
Cclescaffold_90237290.1 Alkaloid 7DLGT low borderline
Cclescaffold_90237520.1 Alkaloid 7DLGT low borderline
Cclescaffold_90241730.1 Alkaloid 7DLGT medium pass
Cclescaffold_90243470.1 Alkaloid 7DLGT low borderline
Cclescaffold_90243520.1 Alkaloid 7DLGT low borderline
Cclescaffold_90243530.1 Alkaloid 7DLGT medium pass
Cclescaffold_90243550.1 Alkaloid 7DLGT medium pass
Cclescaffold_10019690.1 Alkaloid 7DLH medium borderline
Cclescaffold_20033480.1 Alkaloid 7DLH medium borderline
Cclescaffold_30060360.1 Alkaloid 7DLH medium borderline
Cclescaffold_30080420.1 Alkaloid 7DLH medium borderline
Cclescaffold_30080430.1 Alkaloid 7DLH medium borderline
Cclescaffold_30080440.1 Alkaloid 7DLH medium borderline
Cclescaffold_30080470.1 Alkaloid 7DLH medium borderline
Cclescaffold_30080480.1 Alkaloid 7DLH medium borderline
Cclescaffold_30080560.1 Alkaloid 7DLH medium borderline
Cclescaffold_30080570.1 Alkaloid 7DLH medium borderline
Cclescaffold_30092160.1 Alkaloid 7DLH low borderline
Cclescaffold_40106060.1 Alkaloid 7DLH medium borderline
Cclescaffold_40110790.1 Alkaloid 7DLH medium borderline
Cclescaffold_40119830.1 Alkaloid 7DLH medium borderline
Cclescaffold_50129850.1 Alkaloid 7DLH medium borderline
Cclescaffold_50143770.1 Alkaloid 7DLH medium borderline
Cclescaffold_60159790.1 Alkaloid 7DLH medium borderline
Cclescaffold_60172280.1 Alkaloid 7DLH medium borderline
Cclescaffold_70199270.1 Alkaloid 7DLH medium borderline
Cclescaffold_80220630.1 Alkaloid 7DLH medium borderline
Cclescaffold_90242520.1 Alkaloid 7DLH medium borderline