PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Cclescaffold_20049680.1 Alkaloid BBE medium borderline
Cclescaffold_20049700.1 Alkaloid BBE medium borderline
Cclescaffold_20049710.1 Alkaloid BBE medium borderline
Cclescaffold_20049730.1 Alkaloid BBE medium borderline
Cclescaffold_20049760.1 Alkaloid BBE medium borderline
Cclescaffold_20049770.1 Alkaloid BBE medium borderline
Cclescaffold_20049780.1 Alkaloid BBE medium borderline
Cclescaffold_20049790.1 Alkaloid BBE medium borderline
Cclescaffold_30076800.1 Alkaloid BBE medium borderline
Cclescaffold_50129380.1 Alkaloid BBE medium borderline
Cclescaffold_50129390.1 Alkaloid BBE medium borderline
Cclescaffold_50130260.1 Alkaloid BBE medium borderline
Cclescaffold_50130270.1 Alkaloid BBE medium borderline
Cclescaffold_50130280.1 Alkaloid BBE medium borderline
Cclescaffold_50130290.1 Alkaloid BBE medium borderline
Cclescaffold_50130310.1 Alkaloid BBE medium borderline
Cclescaffold_50130330.1 Alkaloid BBE medium borderline
Cclescaffold_50131590.1 Alkaloid BBE medium borderline
Cclescaffold_50131620.1 Alkaloid BBE medium borderline
Cclescaffold_50140070.1 Alkaloid BBE medium borderline
Cclescaffold_50140070.2 Alkaloid BBE medium borderline
Cclescaffold_60170350.1 Alkaloid BBE low borderline
Cclescaffold_60176970.1 Alkaloid BBE medium borderline
Cclescaffold_70192020.1 Alkaloid BBE medium borderline
Cclescaffold_70192030.1 Alkaloid BBE medium borderline
Cclescaffold_70199260.1 Alkaloid BBE medium borderline
Cclescaffold_80206780.1 Alkaloid BBE low borderline
Cclescaffold_80206780.2 Alkaloid BBE low borderline
Cclescaffold_80206780.3 Alkaloid BBE low borderline
Cclescaffold_80215060.1 Alkaloid BBE medium borderline
Cclescaffold_90239320.1 Alkaloid BBE medium borderline
Cclescaffold_90239330.1 Alkaloid BBE medium borderline
Cclescaffold_90239340.1 Alkaloid BBE medium borderline
Cclescaffold_90239350.1 Alkaloid BBE medium borderline
Cclescaffold_90239460.1 Alkaloid BBE medium borderline
Cclescaffold_90242870.1 Alkaloid BBE medium borderline
Cclescaffold_90242890.1 Alkaloid BBE medium borderline
Cclescaffold_90243370.1 Alkaloid BBE medium borderline
Cclescaffold_10007590.1 Alkaloid CNMT low borderline
Cclescaffold_10007590.6 Alkaloid CNMT low borderline
Cclescaffold_10007590.7 Alkaloid CNMT low borderline
Cclescaffold_10012520.1 Alkaloid CNMT low borderline
Cclescaffold_10019970.1 Alkaloid CNMT medium borderline
Cclescaffold_10019970.2 Alkaloid CNMT medium borderline
Cclescaffold_20043720.1 Alkaloid CNMT low borderline
Cclescaffold_40113090.1 Alkaloid CNMT low borderline
Cclescaffold_40125040.1 Alkaloid CNMT low borderline
Cclescaffold_60165870.1 Alkaloid CNMT low borderline
Cclescaffold_60165870.2 Alkaloid CNMT low borderline
Cclescaffold_60175250.1 Alkaloid CNMT low borderline