PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_90240960.1 Rosmarinic Acid C4H medium pass
Cclescaffold_90240980.1 Rosmarinic Acid C4H medium pass
Cclescaffold_90240990.1 Rosmarinic Acid C4H low borderline
Cclescaffold_90241340.1 Rosmarinic Acid C4H low borderline
Cclescaffold_9350245300.1 Rosmarinic Acid C4H low borderline
Cclescaffold_10022100.1 Rosmarinic Acid CPR medium pass
Cclescaffold_10022100.2 Rosmarinic Acid CPR medium pass
Cclescaffold_50146550.1 Rosmarinic Acid CPR medium pass
Cclescaffold_50148920.1 Rosmarinic Acid CPR medium pass
Cclescaffold_50148920.2 Rosmarinic Acid CPR medium pass
Cclescaffold_60166240.1 Rosmarinic Acid CPR medium pass
Cclescaffold_60166240.2 Rosmarinic Acid CPR medium pass
Cclescaffold_70192130.1 Rosmarinic Acid CPR low borderline
Cclescaffold_30066770.1 Rosmarinic Acid HPPR medium pass
Cclescaffold_30100620.1 Rosmarinic Acid HPPR medium pass
Cclescaffold_30100630.1 Rosmarinic Acid HPPR medium pass
Cclescaffold_30100640.1 Rosmarinic Acid HPPR low borderline
Cclescaffold_70191240.1 Rosmarinic Acid HPPR medium pass
Cclescaffold_70191250.1 Rosmarinic Acid HPPR medium pass
Cclescaffold_70191260.1 Rosmarinic Acid HPPR medium pass
Cclescaffold_70191270.1 Rosmarinic Acid HPPR medium pass
Cclescaffold_3790102780.1 Rosmarinic Acid PAL high pass
Cclescaffold_40109260.1 Rosmarinic Acid PAL high pass
Cclescaffold_60161300.1 Rosmarinic Acid PAL high pass
Cclescaffold_60161310.1 Rosmarinic Acid PAL high pass
Cclescaffold_80204150.1 Rosmarinic Acid PAL low borderline
Cclescaffold_80216940.1 Rosmarinic Acid PAL medium pass
Cclescaffold_80216960.1 Rosmarinic Acid PAL high pass
Cclescaffold_80216980.1 Rosmarinic Acid PAL high pass
Cclescaffold_10006570.1 Rosmarinic Acid RAS medium pass
Cclescaffold_10007460.1 Rosmarinic Acid RAS low borderline
Cclescaffold_10020780.1 Rosmarinic Acid RAS medium pass
Cclescaffold_10021810.1 Rosmarinic Acid RAS medium pass
Cclescaffold_20031090.1 Rosmarinic Acid RAS medium pass
Cclescaffold_20031100.1 Rosmarinic Acid RAS medium pass
Cclescaffold_20031120.1 Rosmarinic Acid RAS medium pass
Cclescaffold_20031130.1 Rosmarinic Acid RAS medium pass
Cclescaffold_20031140.1 Rosmarinic Acid RAS medium pass
Cclescaffold_20031160.1 Rosmarinic Acid RAS medium pass
Cclescaffold_20034280.1 Rosmarinic Acid RAS low borderline
Cclescaffold_20034420.1 Rosmarinic Acid RAS low borderline
Cclescaffold_20053620.1 Rosmarinic Acid RAS low borderline
Cclescaffold_20053820.1 Rosmarinic Acid RAS low borderline
Cclescaffold_30061980.1 Rosmarinic Acid RAS low borderline
Cclescaffold_30086950.1 Rosmarinic Acid RAS low borderline
Cclescaffold_30096940.1 Rosmarinic Acid RAS low borderline
Cclescaffold_40104470.1 Rosmarinic Acid RAS low borderline
Cclescaffold_40116460.1 Rosmarinic Acid RAS medium pass
Cclescaffold_50140530.1 Rosmarinic Acid RAS medium pass
Cclescaffold_50155840.1 Rosmarinic Acid RAS low borderline