PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_50145700.1 Steroid SQE medium pass
Cclescaffold_50145700.2 Steroid SQE medium pass
Cclescaffold_50145700.3 Steroid SQE medium pass
Cclescaffold_70185430.1 Steroid SQE medium pass
Cclescaffold_70198290.1 Steroid SQE low borderline
Cclescaffold_80203410.1 Steroid SQE medium pass
Cclescaffold_80203590.1 Steroid SQE medium pass
Cclescaffold_20026400.1 Steroid SQS/FDFT1 medium pass
Cclescaffold_20026420.1 Steroid SQS/FDFT1 low borderline
Cclescaffold_20027520.1 Steroid SQS/FDFT1 medium pass
Cclescaffold_30066070.1 Steroid SQS/FDFT1 low borderline
Cclescaffold_60173050.1 Steroid SQS/FDFT1 medium pass
Cclescaffold_60173050.2 Steroid SQS/FDFT1 medium pass
Cclescaffold_60173050.3 Steroid SQS/FDFT1 medium pass
Cclescaffold_60173050.4 Steroid SQS/FDFT1 low borderline
Cclescaffold_80208680.1 Steroid SQS/FDFT1 high pass
Cclescaffold_80208680.2 Steroid SQS/FDFT1 high pass
Cclescaffold_80208680.3 Steroid SQS/FDFT1 high pass
Cclescaffold_10024370.1 Terpenoid AACT low borderline
Cclescaffold_20041190.1 Terpenoid AACT low borderline
Cclescaffold_20042290.1 Terpenoid AACT medium borderline
Cclescaffold_20042290.2 Terpenoid AACT medium borderline
Cclescaffold_20057290.1 Terpenoid AACT medium borderline
Cclescaffold_20057290.2 Terpenoid AACT medium borderline
Cclescaffold_20057290.3 Terpenoid AACT medium borderline
Cclescaffold_30090520.1 Terpenoid AACT medium borderline
Cclescaffold_90232210.1 Terpenoid AACT medium borderline
Cclescaffold_90235730.1 Terpenoid AACT low borderline
Cclescaffold_10001560.1 Terpenoid BAHD medium pass
Cclescaffold_10003070.1 Terpenoid BAHD low borderline
Cclescaffold_10006570.1 Terpenoid BAHD low borderline
Cclescaffold_10008570.1 Terpenoid BAHD medium pass
Cclescaffold_10008580.1 Terpenoid BAHD medium pass
Cclescaffold_10008880.1 Terpenoid BAHD medium pass
Cclescaffold_10008880.2 Terpenoid BAHD medium pass
Cclescaffold_10009440.1 Terpenoid BAHD medium pass
Cclescaffold_10009720.1 Terpenoid BAHD medium pass
Cclescaffold_10010920.1 Terpenoid BAHD medium pass
Cclescaffold_10015200.1 Terpenoid BAHD low borderline
Cclescaffold_10015200.2 Terpenoid BAHD low borderline
Cclescaffold_10016280.1 Terpenoid BAHD medium pass
Cclescaffold_10016290.1 Terpenoid BAHD medium pass
Cclescaffold_10017230.1 Terpenoid BAHD medium pass
Cclescaffold_10017240.1 Terpenoid BAHD medium pass
Cclescaffold_10020520.1 Terpenoid BAHD medium pass
Cclescaffold_10020780.1 Terpenoid BAHD medium pass
Cclescaffold_10021810.1 Terpenoid BAHD medium pass
Cclescaffold_10023640.1 Terpenoid BAHD medium pass
Cclescaffold_10023640.2 Terpenoid BAHD medium pass
Cclescaffold_10023640.3 Terpenoid BAHD medium pass