PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

877
Candidate Protein Records
648
Pathway-Level Records
1636
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
CLame648650027290 Flavonoid PAL high pass
CLame649250028490 Flavonoid PAL high pass
CLame654390042100 Flavonoid PAL high pass
CLame655780048710 Flavonoid PAL high pass
CLame656810053510 Flavonoid PAL high pass
CLame658050061090 Flavonoid PAL high pass
CLame660170077600 Flavonoid PAL high pass
CLame660760082670 Flavonoid PAL high pass
CLame661330087710 Flavonoid PAL high pass
CLame666570166860 Flavonoid PAL low borderline
CLame667280185020 Flavonoid PAL high pass
CLame670680240790 Flavonoid PAL high pass
CLame586830010180 Flavonoid UFGT medium pass
CLame587420010510 Flavonoid UFGT medium pass
CLame640390019010 Flavonoid UFGT medium pass
CLame648490026990 Flavonoid UFGT medium pass
CLame650170030210 Flavonoid UFGT medium pass
CLame651120032420 Flavonoid UFGT medium pass
CLame651120032430 Flavonoid UFGT medium pass
CLame655310046620 Flavonoid UFGT high pass
CLame658040060940 Flavonoid UFGT medium pass
CLame658270062430 Flavonoid UFGT medium pass
CLame658270062440 Flavonoid UFGT medium pass
CLame658750065990 Flavonoid UFGT medium pass
CLame660050076700 Flavonoid UFGT medium pass
CLame660050076720 Flavonoid UFGT medium pass
CLame660520079650 Flavonoid UFGT low borderline
CLame660540080330 Flavonoid UFGT medium pass
CLame662960107050 Flavonoid UFGT high pass
CLame663320111650 Flavonoid UFGT high pass
CLame663430113060 Flavonoid UFGT medium pass
CLame663430113100 Flavonoid UFGT medium pass
CLame664400124560 Flavonoid UFGT medium pass
CLame665490145160 Flavonoid UFGT medium pass
CLame665940153450 Flavonoid UFGT medium pass
CLame666620167610 Flavonoid UFGT low borderline
CLame666970176130 Flavonoid UFGT high pass
CLame667710197010 Flavonoid UFGT medium pass
CLame668280213620 Flavonoid UFGT medium pass
CLame668350216230 Flavonoid UFGT medium pass
CLame669000232900 Flavonoid UFGT medium pass
CLame669080234660 Flavonoid UFGT medium pass
CLame450180000300 Phenylpropanoid 4CL low borderline
CLame613060013190 Phenylpropanoid 4CL medium pass
CLame655000045090 Phenylpropanoid 4CL medium pass
CLame655460047170 Phenylpropanoid 4CL medium pass
CLame655710048510 Phenylpropanoid 4CL low borderline
CLame655950049240 Phenylpropanoid 4CL low borderline
CLame657010054920 Phenylpropanoid 4CL low borderline
CLame661600090410 Phenylpropanoid 4CL low borderline