PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

877
Candidate Protein Records
648
Pathway-Level Records
1636
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
CLame654390042100 Rosmarinic Acid PAL high pass
CLame655780048710 Rosmarinic Acid PAL high pass
CLame656810053510 Rosmarinic Acid PAL high pass
CLame658050061090 Rosmarinic Acid PAL high pass
CLame660170077600 Rosmarinic Acid PAL high pass
CLame660760082670 Rosmarinic Acid PAL high pass
CLame661330087710 Rosmarinic Acid PAL high pass
CLame666570166860 Rosmarinic Acid PAL low borderline
CLame667280185020 Rosmarinic Acid PAL high pass
CLame670680240790 Rosmarinic Acid PAL high pass
CLame658270062480 Rosmarinic Acid RAS medium pass
CLame659510071570 Rosmarinic Acid RAS low borderline
CLame664120121240 Rosmarinic Acid RAS low borderline
CLame664120121260 Rosmarinic Acid RAS low borderline
CLame665390142780 Rosmarinic Acid RAS low borderline
CLame665720148640 Rosmarinic Acid RAS medium pass
CLame665880152400 Rosmarinic Acid RAS low borderline
CLame666160157870 Rosmarinic Acid RAS medium pass
CLame666620167630 Rosmarinic Acid RAS low borderline
CLame666900174010 Rosmarinic Acid RAS medium pass
CLame668510221270 Rosmarinic Acid RAS medium pass
CLame654320041710 Rosmarinic Acid TAT medium pass
CLame666390163110 Rosmarinic Acid TAT medium pass
CLame668120208340 Rosmarinic Acid TAT medium pass
CLame532030005260 Steroid BR6OX1/CYP85A1 medium borderline
CLame656040049900 Steroid BR6OX1/CYP85A1 medium borderline
CLame656040049970 Steroid BR6OX1/CYP85A1 medium borderline
CLame667010176760 Steroid BR6OX1/CYP85A1 medium borderline
CLame667200182760 Steroid BR6OX1/CYP85A1 low borderline
CLame635880017760 Steroid BR6OX2/CYP85A2 low borderline
CLame640490019190 Steroid BR6OX2/CYP85A2 low borderline
CLame654160040860 Steroid BR6OX2/CYP85A2 medium borderline
CLame655200046040 Steroid BR6OX2/CYP85A2 low borderline
CLame656330051260 Steroid BR6OX2/CYP85A2 low borderline
CLame656640052160 Steroid BR6OX2/CYP85A2 low borderline
CLame658110061190 Steroid BR6OX2/CYP85A2 medium borderline
CLame658110061250 Steroid BR6OX2/CYP85A2 low borderline
CLame658330063090 Steroid BR6OX2/CYP85A2 low borderline
CLame658830066340 Steroid BR6OX2/CYP85A2 low borderline
CLame659810074340 Steroid BR6OX2/CYP85A2 low borderline
CLame660090077100 Steroid BR6OX2/CYP85A2 low borderline
CLame660150077420 Steroid BR6OX2/CYP85A2 low borderline
CLame662800104610 Steroid BR6OX2/CYP85A2 low borderline
CLame662800104660 Steroid BR6OX2/CYP85A2 low borderline
CLame663290111050 Steroid BR6OX2/CYP85A2 low borderline
CLame664140121290 Steroid BR6OX2/CYP85A2 low borderline
CLame664750129670 Steroid BR6OX2/CYP85A2 low borderline
CLame664860132530 Steroid BR6OX2/CYP85A2 low borderline
CLame664860132540 Steroid BR6OX2/CYP85A2 low borderline
CLame665010135670 Steroid BR6OX2/CYP85A2 low borderline