PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
CLame667070178780 Alkaloid IO medium borderline
CLame667510190550 Alkaloid IO medium borderline
CLame667550192540 Alkaloid IO medium borderline
CLame668120208660 Alkaloid IO medium borderline
CLame669080234670 Alkaloid IO medium borderline
CLame659910075150 Alkaloid ISY low borderline
CLame478790002450 Alkaloid LAMT medium borderline
CLame646020023760 Alkaloid LAMT medium borderline
CLame648340026590 Alkaloid LAMT medium borderline
CLame654220041120 Alkaloid LAMT medium borderline
CLame663830118420 Alkaloid LAMT low borderline
CLame665250140710 Alkaloid LAMT low borderline
CLame666670168750 Alkaloid LAMT medium borderline
CLame667090179570 Alkaloid LAMT medium pass
CLame710241360 Alkaloid LAMT medium pass
CLame650150030010 Alkaloid MPO medium pass
CLame658150061540 Alkaloid MPO low borderline
CLame663760117340 Alkaloid MPO high pass
CLame666160157740 Alkaloid MPO medium pass
CLame668660225980 Alkaloid MPO high pass
CLame649850029450 Alkaloid NCS medium borderline
CLame658970067800 Alkaloid NCS medium borderline
CLame660630081280 Alkaloid NCS low borderline
CLame662000095000 Alkaloid NCS low borderline
CLame662000095110 Alkaloid NCS low borderline
CLame663550114690 Alkaloid NCS medium borderline
CLame666710170140 Alkaloid NCS low borderline
CLame667280185120 Alkaloid NCS medium borderline
CLame667400188350 Alkaloid NCS medium borderline
CLame668460219570 Alkaloid NCS medium borderline
CLame701230241210 Alkaloid NCS low borderline
CLame701240241220 Alkaloid NCS low borderline
CLame533320006770 Alkaloid NMT medium pass
CLame587700010620 Alkaloid NMT medium pass
CLame650680031530 Alkaloid NMT medium pass
CLame656020049720 Alkaloid NMT medium pass
CLame656020049730 Alkaloid NMT medium pass
CLame656090050180 Alkaloid NMT low borderline
CLame658120061280 Alkaloid NMT medium pass
CLame659010067940 Alkaloid NMT medium pass
CLame659650072820 Alkaloid NMT low borderline
CLame660310078630 Alkaloid NMT low borderline
CLame661940094080 Alkaloid NMT medium pass
CLame662130096820 Alkaloid NMT low borderline
CLame662540101370 Alkaloid NMT medium borderline
CLame663100108710 Alkaloid NMT low borderline
CLame663350111890 Alkaloid NMT medium borderline
CLame663400112660 Alkaloid NMT medium pass
CLame663590114990 Alkaloid NMT medium pass
CLame663610115070 Alkaloid NMT medium pass