Hygroamblystegium varium (hygroamblystegium_varium)
Imported from atlas release summary for Hygroamblystegium varium.
1693
Candidate Protein Records
1226
Pathway-Level Records
2943
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2943
Family-Level Calls
BAHD
6.35%
POD
6.29%
4CL
5.61%
C4H
5.54%
C3'H/CYP98A
4.55%
CYP76
3.7%
NMT
3.67%
PAL
2.85%
Other Families
61.43%
More Families (96)
STR
78
2.65%
IFS
78
2.65%
IFR
74
2.51%
F3H
74
2.51%
UGT
63
2.14%
GS
61
2.07%
BR6OX2/CYP85A2
56
1.9%
T3O
55
1.87%
UFGT
53
1.8%
PYKS
52
1.77%
7DLGT
51
1.73%
DWF4/CYP90B1
51
1.73%
F3'H/CYP75B
50
1.7%
CODM/T6ODM
49
1.66%
CAD
41
1.39%
CAS
41
1.39%
TRI/TRII
40
1.36%
H6H
39
1.33%
IO
37
1.26%
SMT1/SMT2/SMT3
37
1.26%
CYP71
33
1.12%
CHS
31
1.05%
COMT
27
0.92%
CSE
23
0.78%
NCS
22
0.75%
8HGO
21
0.71%
F3'5'H/CYP75A
21
0.71%
HCT
19
0.65%
SLS
18
0.61%
G8O/G8H
17
0.58%
RAS
17
0.58%
LAMT
16
0.54%
TPS
16
0.54%
CYP90D1
15
0.51%
BBE
14
0.48%
COR
14
0.48%
7DLH
14
0.48%
CNMT
14
0.48%
SGD
14
0.48%
CPR
13
0.44%
SQS/FDFT1
13
0.44%
16OMT
12
0.41%
T16H
12
0.41%
GES
12
0.41%
LAC
12
0.41%
CCR
12
0.41%
GGPPS
12
0.41%
ANR
11
0.37%
FNS
11
0.37%
CPD/CYP90A1
11
0.37%
PMT
10
0.34%
CYP80B1
10
0.34%
TDC
10
0.34%
DWF5
10
0.34%
ROT3/CYP90C1
9
0.31%
AACT
9
0.31%
CHI
8
0.27%
TAT
8
0.27%
CYP719
7
0.24%
ANS/LDOX
7
0.24%
DFR
7
0.24%
BR6OX1/CYP85A1
7
0.24%
SMO1/SMO2
7
0.24%
FPPS
7
0.24%
HDS/IspG
7
0.24%
MPO
6
0.2%
F5H/CYP84A
6
0.2%
DET2
6
0.2%
6OMT_4OMT_SOMT
5
0.17%
TYDC_DDC
5
0.17%
CCoAOMT
5
0.17%
MVK
5
0.17%
HDR/IspH
5
0.17%
MVD
5
0.17%
ISY
4
0.14%
ADC
4
0.14%
FLS
4
0.14%
HMGR
4
0.14%
PMK
4
0.14%
MCT/IspD
4
0.14%
HPPR
3
0.1%
HYD1
3
0.1%
CYP51G1
3
0.1%
DWF1
3
0.1%
SQE
3
0.1%
HMGS
3
0.1%
DWF7
2
0.07%
CPI1
2
0.07%
FK
2
0.07%
MDS/IspF
2
0.07%
CMK/IspE
2
0.07%
DXR
2
0.07%
IDI
2
0.07%
DXS
2
0.07%
CYP80F1
1
0.03%
XMT_MXMT_DXMT
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 327 | 11 | POD (177) | View species results |
| Terpenoid pathway | 295 | 20 | BAHD (119) | View species results |
| Alkaloid pathway | 225 | 20 | NMT (45) | View species results |
| Flavonoid pathway | 162 | 9 | UFGT (49) | View species results |
| Rosmarinic acid pathway | 126 | 7 | C4H (40) | View species results |
| Steroid pathway | 91 | 12 | CAS (38) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 917 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 223 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| HvarHygva1519830068270 | Alkaloid | SGD | low | borderline |
| HvarHygva1528070071780 | Alkaloid | SGD | medium | pass |
| HvarHygva1568160131580 | Alkaloid | SGD | low | borderline |
| HvarHygva1739560244780 | Alkaloid | SGD | low | borderline |
| HvarHygva1739570244830 | Alkaloid | SGD | low | borderline |
| HvarHygva19550292670 | Alkaloid | SGD | medium | pass |
| HvarHygva20430301040 | Alkaloid | SGD | medium | pass |
| HvarHygva23630329760 | Alkaloid | SGD | medium | pass |
| HvarHygva23840331720 | Alkaloid | SGD | medium | pass |
| HvarHygva24030333320 | Alkaloid | SGD | medium | pass |
| HvarHygva27780370570 | Alkaloid | SGD | medium | pass |
| HvarHygva30550396120 | Alkaloid | SGD | low | borderline |
| HvarHygva6130436130 | Alkaloid | SGD | medium | pass |
| HvarHygva7570450090 | Alkaloid | SGD | medium | pass |
| HvarHygva1429860046220 | Alkaloid | SLS | medium | borderline |
| HvarHygva1440048790 | Alkaloid | SLS | medium | borderline |
| HvarHygva14610052200 | Alkaloid | SLS | medium | borderline |
| HvarHygva1491480058820 | Alkaloid | SLS | medium | borderline |
| HvarHygva1553520096000 | Alkaloid | SLS | medium | borderline |
| HvarHygva1563980118070 | Alkaloid | SLS | medium | borderline |
| HvarHygva1566220124100 | Alkaloid | SLS | medium | borderline |
| HvarHygva1567890130970 | Alkaloid | SLS | medium | borderline |
| HvarHygva16980223080 | Alkaloid | SLS | medium | borderline |
| HvarHygva17120225350 | Alkaloid | SLS | medium | borderline |
| HvarHygva17930278670 | Alkaloid | SLS | medium | borderline |
| HvarHygva20860305160 | Alkaloid | SLS | medium | borderline |
| HvarHygva22260316960 | Alkaloid | SLS | medium | borderline |
| HvarHygva23750330680 | Alkaloid | SLS | medium | borderline |
| HvarHygva24260335140 | Alkaloid | SLS | medium | borderline |
| HvarHygva24380336150 | Alkaloid | SLS | medium | borderline |
| HvarHygva27290365870 | Alkaloid | SLS | medium | borderline |
| HvarHygva30780398930 | Alkaloid | SLS | medium | borderline |
| HvarHygva10500005470 | Alkaloid | STR | medium | pass |
| HvarHygva13710037360 | Alkaloid | STR | low | borderline |
| HvarHygva1382670039430 | Alkaloid | STR | medium | pass |
| HvarHygva1440048760 | Alkaloid | STR | low | borderline |
| HvarHygva1444600049780 | Alkaloid | STR | low | borderline |
| HvarHygva1502750062410 | Alkaloid | STR | medium | pass |
| HvarHygva1530270073350 | Alkaloid | STR | low | borderline |
| HvarHygva15310073900 | Alkaloid | STR | low | borderline |
| HvarHygva15310073910 | Alkaloid | STR | low | borderline |
| HvarHygva1543630083370 | Alkaloid | STR | low | borderline |
| HvarHygva15500090750 | Alkaloid | STR | low | borderline |
| HvarHygva15500090760 | Alkaloid | STR | low | borderline |
| HvarHygva1556730101870 | Alkaloid | STR | medium | pass |
| HvarHygva1558000104220 | Alkaloid | STR | low | borderline |
| HvarHygva1558000104230 | Alkaloid | STR | low | borderline |
| HvarHygva1559910107190 | Alkaloid | STR | low | borderline |
| HvarHygva1562870114790 | Alkaloid | STR | low | borderline |
| HvarHygva1563880117420 | Alkaloid | STR | medium | pass |