PlantSME Plant secondary metabolism enzyme database

Hygroamblystegium varium (hygroamblystegium_varium)

Imported from atlas release summary for Hygroamblystegium varium.

1226
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 327 11 POD (177) View species results
Terpenoid pathway 295 20 BAHD (119) View species results
Alkaloid pathway 225 20 NMT (45) View species results
Flavonoid pathway 162 9 UFGT (49) View species results
Rosmarinic acid pathway 126 7 C4H (40) View species results
Steroid pathway 91 12 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 917 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 223 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
HvarHygva11630015800 Alkaloid H6H medium borderline
HvarHygva11660016180 Alkaloid H6H low borderline
HvarHygva1246610023970 Alkaloid H6H medium borderline
HvarHygva1360035880 Alkaloid H6H medium borderline
HvarHygva14280045740 Alkaloid H6H medium borderline
HvarHygva14280045750 Alkaloid H6H low borderline
HvarHygva1438670048320 Alkaloid H6H medium borderline
HvarHygva1494580059850 Alkaloid H6H low borderline
HvarHygva1556760102000 Alkaloid H6H low borderline
HvarHygva1563340116590 Alkaloid H6H low borderline
HvarHygva1571670143160 Alkaloid H6H low borderline
HvarHygva1573240149460 Alkaloid H6H low borderline
HvarHygva15740152040 Alkaloid H6H low borderline
HvarHygva15740152050 Alkaloid H6H low borderline
HvarHygva1577790164320 Alkaloid H6H low borderline
HvarHygva1581540176840 Alkaloid H6H medium borderline
HvarHygva1585740191170 Alkaloid H6H medium borderline
HvarHygva15920208480 Alkaloid H6H medium pass
HvarHygva1718150231140 Alkaloid H6H medium pass
HvarHygva1718180231180 Alkaloid H6H medium pass
HvarHygva1760260300 Alkaloid H6H medium pass
HvarHygva1769860269600 Alkaloid H6H low borderline
HvarHygva1769870269640 Alkaloid H6H low borderline
HvarHygva17880278070 Alkaloid H6H medium borderline
HvarHygva19680293990 Alkaloid H6H low borderline
HvarHygva21900314190 Alkaloid H6H medium borderline
HvarHygva21970314650 Alkaloid H6H medium borderline
HvarHygva22660319390 Alkaloid H6H medium pass
HvarHygva22780320630 Alkaloid H6H medium borderline
HvarHygva25100344000 Alkaloid H6H low borderline
HvarHygva25820350950 Alkaloid H6H low borderline
HvarHygva26780360560 Alkaloid H6H low borderline
HvarHygva28040373140 Alkaloid H6H low borderline
HvarHygva29170382380 Alkaloid H6H low borderline
HvarHygva2940384540 Alkaloid H6H medium borderline
HvarHygva30210392890 Alkaloid H6H medium borderline
HvarHygva7630450910 Alkaloid H6H low borderline
HvarHygva7780452340 Alkaloid H6H low borderline
HvarHygva8450458860 Alkaloid H6H medium borderline