Hygroamblystegium varium (hygroamblystegium_varium)
Imported from atlas release summary for Hygroamblystegium varium.
1226
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1226
Candidate Genes
BAHD
6.35%
POD
6.29%
4CL
5.61%
C4H
5.54%
C3'H/CYP98A
4.55%
CYP76
3.7%
NMT
3.67%
PAL
2.85%
Other Families
61.43%
More Families (96)
STR
78
2.65%
IFS
78
2.65%
IFR
74
2.51%
F3H
74
2.51%
UGT
63
2.14%
GS
61
2.07%
BR6OX2/CYP85A2
56
1.9%
T3O
55
1.87%
UFGT
53
1.8%
PYKS
52
1.77%
7DLGT
51
1.73%
DWF4/CYP90B1
51
1.73%
F3'H/CYP75B
50
1.7%
CODM/T6ODM
49
1.66%
CAD
41
1.39%
CAS
41
1.39%
TRI/TRII
40
1.36%
H6H
39
1.33%
IO
37
1.26%
SMT1/SMT2/SMT3
37
1.26%
CYP71
33
1.12%
CHS
31
1.05%
COMT
27
0.92%
CSE
23
0.78%
NCS
22
0.75%
8HGO
21
0.71%
F3'5'H/CYP75A
21
0.71%
HCT
19
0.65%
SLS
18
0.61%
G8O/G8H
17
0.58%
RAS
17
0.58%
LAMT
16
0.54%
TPS
16
0.54%
CYP90D1
15
0.51%
BBE
14
0.48%
COR
14
0.48%
7DLH
14
0.48%
CNMT
14
0.48%
SGD
14
0.48%
CPR
13
0.44%
SQS/FDFT1
13
0.44%
16OMT
12
0.41%
T16H
12
0.41%
GES
12
0.41%
LAC
12
0.41%
CCR
12
0.41%
GGPPS
12
0.41%
ANR
11
0.37%
FNS
11
0.37%
CPD/CYP90A1
11
0.37%
PMT
10
0.34%
CYP80B1
10
0.34%
TDC
10
0.34%
DWF5
10
0.34%
ROT3/CYP90C1
9
0.31%
AACT
9
0.31%
CHI
8
0.27%
TAT
8
0.27%
CYP719
7
0.24%
ANS/LDOX
7
0.24%
DFR
7
0.24%
BR6OX1/CYP85A1
7
0.24%
SMO1/SMO2
7
0.24%
FPPS
7
0.24%
HDS/IspG
7
0.24%
MPO
6
0.2%
F5H/CYP84A
6
0.2%
DET2
6
0.2%
6OMT_4OMT_SOMT
5
0.17%
TYDC_DDC
5
0.17%
CCoAOMT
5
0.17%
MVK
5
0.17%
HDR/IspH
5
0.17%
MVD
5
0.17%
ISY
4
0.14%
ADC
4
0.14%
FLS
4
0.14%
HMGR
4
0.14%
PMK
4
0.14%
MCT/IspD
4
0.14%
HPPR
3
0.1%
HYD1
3
0.1%
CYP51G1
3
0.1%
DWF1
3
0.1%
SQE
3
0.1%
HMGS
3
0.1%
DWF7
2
0.07%
CPI1
2
0.07%
FK
2
0.07%
MDS/IspF
2
0.07%
CMK/IspE
2
0.07%
DXR
2
0.07%
IDI
2
0.07%
DXS
2
0.07%
CYP80F1
1
0.03%
XMT_MXMT_DXMT
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 327 | 11 | POD (177) | View species results |
| Terpenoid pathway | 295 | 20 | BAHD (119) | View species results |
| Alkaloid pathway | 225 | 20 | NMT (45) | View species results |
| Flavonoid pathway | 162 | 9 | UFGT (49) | View species results |
| Rosmarinic acid pathway | 126 | 7 | C4H (40) | View species results |
| Steroid pathway | 91 | 12 | CAS (38) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 917 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 223 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| HvarHygva13980042160 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| HvarHygva1455870051460 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| HvarHygva1480440056520 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| HvarHygva15070063750 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| HvarHygva1512300065870 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| HvarHygva15380077810 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| HvarHygva1539680079070 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| HvarHygva1555180099030 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| HvarHygva1560570108840 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| HvarHygva1565970122730 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| HvarHygva1566270124170 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| HvarHygva1573630150980 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| HvarHygva1574330152500 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| HvarHygva15890204170 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| HvarHygva16390215490 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| HvarHygva17070224100 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| HvarHygva1740000245430 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| HvarHygva1740010245480 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| HvarHygva1744960249880 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| HvarHygva1744970249910 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| HvarHygva17640264570 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| HvarHygva18270281030 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| HvarHygva18980287530 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| HvarHygva19320290820 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| HvarHygva21080306910 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| HvarHygva21150307910 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| HvarHygva22160316130 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| HvarHygva23560328800 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| HvarHygva25000343500 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| HvarHygva25000343530 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| HvarHygva260352720 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| HvarHygva260352730 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| HvarHygva26510358010 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| HvarHygva28500376850 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| HvarHygva29730388100 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| HvarHygva30230392950 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| HvarHygva3830412370 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| HvarHygva8230456270 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| HvarHygva8370458160 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| HvarHygva8760461690 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |