PlantSME Plant secondary metabolism enzyme database

Hygroamblystegium varium (hygroamblystegium_varium)

Imported from atlas release summary for Hygroamblystegium varium.

1226
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 327 11 POD (177) View species results
Terpenoid pathway 295 20 BAHD (119) View species results
Alkaloid pathway 225 20 NMT (45) View species results
Flavonoid pathway 162 9 UFGT (49) View species results
Rosmarinic acid pathway 126 7 C4H (40) View species results
Steroid pathway 91 12 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 917 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 223 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
HvarHygva11600015290 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HvarHygva14860057560 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HvarHygva1520450068780 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HvarHygva1547640088440 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HvarHygva1559620106940 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HvarHygva1566130123320 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HvarHygva1573100148670 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HvarHygva1574840154450 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HvarHygva1580640173880 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HvarHygva1588130200790 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HvarHygva16530216960 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HvarHygva17240234010 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HvarHygva1780570277400 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HvarHygva1780580277430 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HvarHygva21910314260 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HvarHygva23640330020 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HvarHygva25270345380 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HvarHygva26380356420 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HvarHygva5510429280 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HvarHygva870461020 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HvarHygva9530469890 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HvarHygva9530470010 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO