PlantSME Plant secondary metabolism enzyme database

Hygroamblystegium varium (hygroamblystegium_varium)

Imported from atlas release summary for Hygroamblystegium varium.

1226
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.67% Terpenoid pathway 24.06% Alkaloid pathway 18.35% Flavonoid pathway 13.21% Rosmarinic acid pathway 10.28% Steroid pathway 7.42%
Family Distribution
BAHD 6.35% POD 6.29% 4CL 5.61% C4H 5.54% C3'H/CYP98A 4.55% CYP76 3.7% NMT 3.67% PAL 2.85%
Other Families 61.43%
More Families (96)
STR 78 2.65% IFS 78 2.65% IFR 74 2.51% F3H 74 2.51% UGT 63 2.14% GS 61 2.07% BR6OX2/CYP85A2 56 1.9% T3O 55 1.87% UFGT 53 1.8% PYKS 52 1.77% 7DLGT 51 1.73% DWF4/CYP90B1 51 1.73% F3'H/CYP75B 50 1.7% CODM/T6ODM 49 1.66% CAD 41 1.39% CAS 41 1.39% TRI/TRII 40 1.36% H6H 39 1.33% IO 37 1.26% SMT1/SMT2/SMT3 37 1.26% CYP71 33 1.12% CHS 31 1.05% COMT 27 0.92% CSE 23 0.78% NCS 22 0.75% 8HGO 21 0.71% F3'5'H/CYP75A 21 0.71% HCT 19 0.65% SLS 18 0.61% G8O/G8H 17 0.58% RAS 17 0.58% LAMT 16 0.54% TPS 16 0.54% CYP90D1 15 0.51% BBE 14 0.48% COR 14 0.48% 7DLH 14 0.48% CNMT 14 0.48% SGD 14 0.48% CPR 13 0.44% SQS/FDFT1 13 0.44% 16OMT 12 0.41% T16H 12 0.41% GES 12 0.41% LAC 12 0.41% CCR 12 0.41% GGPPS 12 0.41% ANR 11 0.37% FNS 11 0.37% CPD/CYP90A1 11 0.37% PMT 10 0.34% CYP80B1 10 0.34% TDC 10 0.34% DWF5 10 0.34% ROT3/CYP90C1 9 0.31% AACT 9 0.31% CHI 8 0.27% TAT 8 0.27% CYP719 7 0.24% ANS/LDOX 7 0.24% DFR 7 0.24% BR6OX1/CYP85A1 7 0.24% SMO1/SMO2 7 0.24% FPPS 7 0.24% HDS/IspG 7 0.24% MPO 6 0.2% F5H/CYP84A 6 0.2% DET2 6 0.2% 6OMT_4OMT_SOMT 5 0.17% TYDC_DDC 5 0.17% CCoAOMT 5 0.17% MVK 5 0.17% HDR/IspH 5 0.17% MVD 5 0.17% ISY 4 0.14% ADC 4 0.14% FLS 4 0.14% HMGR 4 0.14% PMK 4 0.14% MCT/IspD 4 0.14% HPPR 3 0.1% HYD1 3 0.1% CYP51G1 3 0.1% DWF1 3 0.1% SQE 3 0.1% HMGS 3 0.1% DWF7 2 0.07% CPI1 2 0.07% FK 2 0.07% MDS/IspF 2 0.07% CMK/IspE 2 0.07% DXR 2 0.07% IDI 2 0.07% DXS 2 0.07% CYP80F1 1 0.03% XMT_MXMT_DXMT 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 327 11 POD (177) View species results
Terpenoid pathway 295 20 BAHD (119) View species results
Alkaloid pathway 225 20 NMT (45) View species results
Flavonoid pathway 162 9 UFGT (49) View species results
Rosmarinic acid pathway 126 7 C4H (40) View species results
Steroid pathway 91 12 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 917 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 223 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status
HvarHygva11250011570 Alkaloid LAMT low borderline
HvarHygva1370037240 Alkaloid LAMT medium pass
HvarHygva14960060420 Alkaloid LAMT medium borderline
HvarHygva1550270091490 Alkaloid LAMT low borderline
HvarHygva1558880105610 Alkaloid LAMT medium borderline
HvarHygva19450291930 Alkaloid LAMT low borderline
HvarHygva21970314640 Alkaloid LAMT medium borderline
HvarHygva21980314830 Alkaloid LAMT medium borderline
HvarHygva23320326580 Alkaloid LAMT low borderline
HvarHygva25500347850 Alkaloid LAMT medium pass
HvarHygva31090402690 Alkaloid LAMT medium pass
HvarHygva3740411450 Alkaloid LAMT low borderline
HvarHygva390412910 Alkaloid LAMT medium pass
HvarHygva5420428550 Alkaloid LAMT low borderline
HvarHygva9230466730 Alkaloid LAMT medium borderline
HvarHygva9380468160 Alkaloid LAMT medium pass