PlantSME Plant secondary metabolism enzyme database

Hygroamblystegium varium (hygroamblystegium_varium)

Imported from atlas release summary for Hygroamblystegium varium.

1693
Candidate Protein Records
1226
Pathway-Level Records
2943
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 327 11 POD (177) View species results
Terpenoid pathway 295 20 BAHD (119) View species results
Alkaloid pathway 225 20 NMT (45) View species results
Flavonoid pathway 162 9 UFGT (49) View species results
Rosmarinic acid pathway 126 7 C4H (40) View species results
Steroid pathway 91 12 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 917 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 223 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
HvarHygva1577740164040 Terpenoid DXR high pass
HvarHygva1584770187790 Terpenoid DXR high pass
HvarHygva5360428040 Terpenoid DXS medium pass
HvarHygva5700431490 Terpenoid DXS medium pass
HvarHygva1427850045700 Terpenoid FPPS low borderline
HvarHygva1577440162940 Terpenoid FPPS medium pass
HvarHygva1584090185450 Terpenoid FPPS medium pass
HvarHygva1584090185460 Terpenoid FPPS medium pass
HvarHygva17230233250 Terpenoid FPPS low borderline
HvarHygva23680330240 Terpenoid FPPS medium pass
HvarHygva28730378840 Terpenoid FPPS medium pass
HvarHygva10230002550 Terpenoid GGPPS medium borderline
HvarHygva1540300079760 Terpenoid GGPPS medium borderline
HvarHygva1570000137330 Terpenoid GGPPS medium borderline
HvarHygva1575790158000 Terpenoid GGPPS medium borderline
HvarHygva16000211240 Terpenoid GGPPS medium borderline
HvarHygva16000211270 Terpenoid GGPPS medium borderline
HvarHygva26170354150 Terpenoid GGPPS medium borderline
HvarHygva26760360450 Terpenoid GGPPS medium borderline
HvarHygva27590368230 Terpenoid GGPPS medium borderline
HvarHygva29020380940 Terpenoid GGPPS medium borderline
HvarHygva6280437510 Terpenoid GGPPS medium borderline
HvarHygva830457120 Terpenoid GGPPS medium borderline
HvarHygva13350033300 Terpenoid HDR/IspH low borderline
HvarHygva1508950064660 Terpenoid HDR/IspH high pass
HvarHygva1570430139610 Terpenoid HDR/IspH high pass
HvarHygva1735430241530 Terpenoid HDR/IspH high pass
HvarHygva1735440241610 Terpenoid HDR/IspH high pass
HvarHygva1484490057170 Terpenoid HDS/IspG high pass
HvarHygva15330074790 Terpenoid HDS/IspG high pass
HvarHygva1568180131610 Terpenoid HDS/IspG medium pass
HvarHygva1584340186290 Terpenoid HDS/IspG high pass
HvarHygva19640293700 Terpenoid HDS/IspG high pass
HvarHygva20610303330 Terpenoid HDS/IspG low borderline
HvarHygva8200456130 Terpenoid HDS/IspG low borderline
HvarHygva13760037980 Terpenoid HMGR low borderline
HvarHygva1568730134120 Terpenoid HMGR medium pass
HvarHygva1712840226490 Terpenoid HMGR medium pass
HvarHygva1712850226540 Terpenoid HMGR medium pass
HvarHygva1718140231130 Terpenoid HMGS high pass
HvarHygva1718170231170 Terpenoid HMGS high pass
HvarHygva7780452360 Terpenoid HMGS high pass
HvarHygva30780398880 Terpenoid IDI medium pass
HvarHygva7690451480 Terpenoid IDI medium pass
HvarHygva1539790079160 Terpenoid MCT/IspD low borderline
HvarHygva1545960086170 Terpenoid MCT/IspD low borderline
HvarHygva1584090185510 Terpenoid MCT/IspD high pass
HvarHygva25960352280 Terpenoid MCT/IspD high pass
HvarHygva1547240087840 Terpenoid MDS/IspF high pass
HvarHygva24440336870 Terpenoid MDS/IspF high pass