Isatis indigotica (isatis_indigotica)
Imported from atlas release summary for Isatis indigotica.
1891
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1891
Candidate Genes
BAHD
7.08%
4CL
5.93%
C4H
5.44%
C3'H/CYP98A
4.79%
POD
4.23%
CYP76
3.39%
NMT
3.33%
IFS
3.28%
Other Families
62.53%
More Families (96)
F3H
135
3.03%
T3O
128
2.88%
SGD
126
2.83%
UGT
112
2.52%
7DLGT
99
2.23%
DWF4/CYP90B1
88
1.98%
UFGT
84
1.89%
SMT1/SMT2/SMT3
82
1.84%
CODM/T6ODM
81
1.82%
CAD
75
1.69%
CYP71
73
1.64%
STR
71
1.6%
CAS
69
1.55%
F3'H/CYP75B
68
1.53%
BBE
57
1.28%
BR6OX2/CYP85A2
55
1.24%
H6H
53
1.19%
CSE
52
1.17%
TPS
52
1.17%
GES
49
1.1%
IFR
46
1.03%
COMT
43
0.97%
LAMT
41
0.92%
T16H
40
0.9%
IO
39
0.88%
CCR
37
0.83%
CYP90D1
36
0.81%
ANR
35
0.79%
RAS
33
0.74%
TAT
33
0.74%
GS
32
0.72%
LAC
32
0.72%
TRI/TRII
31
0.7%
FNS
31
0.7%
NCS
30
0.67%
COR
30
0.67%
8HGO
30
0.67%
G8O/G8H
28
0.63%
F3'5'H/CYP75A
26
0.58%
SQE
24
0.54%
BR6OX1/CYP85A1
23
0.52%
16OMT
22
0.49%
F5H/CYP84A
22
0.49%
CPD/CYP90A1
21
0.47%
ANS/LDOX
20
0.45%
ROT3/CYP90C1
20
0.45%
SLS
18
0.4%
GGPPS
17
0.38%
HCT
16
0.36%
CPR
16
0.36%
PAL
15
0.34%
CYP51G1
15
0.34%
AACT
14
0.31%
DFR
13
0.29%
SQS/FDFT1
13
0.29%
PYKS
11
0.25%
CYP719
11
0.25%
XMT_MXMT_DXMT
11
0.25%
FPPS
11
0.25%
PMT
10
0.22%
CCoAOMT
10
0.22%
CNMT
9
0.2%
CHI
9
0.2%
SMO1/SMO2
9
0.2%
CYP80B1
8
0.18%
MPO
8
0.18%
DXS
8
0.18%
CMK/IspE
8
0.18%
CHS
7
0.16%
MCT/IspD
7
0.16%
HDS/IspG
7
0.16%
7DLH
6
0.13%
HMGS
6
0.13%
TYDC_DDC
5
0.11%
FLS
5
0.11%
HPPR
5
0.11%
DWF7
5
0.11%
MVD
5
0.11%
HMGR
5
0.11%
ADC
4
0.09%
CPI1
4
0.09%
DWF5
4
0.09%
MVK
4
0.09%
HDR/IspH
4
0.09%
ISY
3
0.07%
TDC
3
0.07%
DWF1
3
0.07%
DET2
3
0.07%
IDI
3
0.07%
6OMT_4OMT_SOMT
2
0.04%
DXR
2
0.04%
PMK
2
0.04%
ODC
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 546 | 19 | BAHD (267) | View species results |
| Alkaloid pathway | 445 | 21 | SGD (119) | View species results |
| Phenylpropanoid pathway | 406 | 13 | POD (177) | View species results |
| Rosmarinic acid pathway | 170 | 7 | C4H (61) | View species results |
| Flavonoid pathway | 167 | 11 | UFGT (64) | View species results |
| Steroid pathway | 157 | 11 | SMT1/SMT2/SMT3 (56) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1477 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 364 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Iind06G0009680.7 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| Iind06G0009680.8 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| Iind06G0009690.1 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| Iind06G0012060.1 | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| Iind06G0012060.2 | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| Iind06G0012060.3 | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| Iind06G0017050.1 | Terpenoid | BAHD | low | borderline | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Iind06G0017130.1 | Terpenoid | BAHD | medium | pass | BAHD__00030__sp_O80816_GLC_ARATH |
| Iind06G0017340.1 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Iind06G0017500.1 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| Iind06G0020870.1 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Iind06G0021010.1 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Iind06G0021280.1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| Iind06G0022330.1 | Terpenoid | BAHD | medium | pass | BAHD__00092__sp_Q9SU91_LPXA_ARATH |
| Iind06G0023640.1 | Terpenoid | BAHD | medium | pass | BAHD__00054__sp_Q8GYW8_SCT_ARATH |
| Iind06G0025250.1 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| Iind06G0025370.1 | Terpenoid | BAHD | medium | pass | BAHD__00086__sp_Q9M306_ZDH10_ARATH |
| Iind06G0025760.1 | Terpenoid | BAHD | medium | pass | BAHD__00010__sp_A0AAW1LG41_BAHD1_SAPOF |
| Iind06G0025770.1 | Terpenoid | BAHD | medium | pass | BAHD__00024__sp_O23393_BIA1_ARATH |
| Iind06G0025840.1 | Terpenoid | BAHD | medium | pass | BAHD__00087__sp_Q9M3B1_WSD6_ARATH |
| Iind06G0025850.1 | Terpenoid | BAHD | medium | pass | BAHD__00087__sp_Q9M3B1_WSD6_ARATH |
| Iind06G0025860.1 | Terpenoid | BAHD | medium | pass | BAHD__00087__sp_Q9M3B1_WSD6_ARATH |
| Iind06G0025860.2 | Terpenoid | BAHD | medium | pass | BAHD__00087__sp_Q9M3B1_WSD6_ARATH |
| Iind06G0025860.3 | Terpenoid | BAHD | medium | pass | BAHD__00087__sp_Q9M3B1_WSD6_ARATH |
| Iind06G0026960.1 | Terpenoid | BAHD | low | borderline | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Iind06G0026970.1 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Iind06G0026980.1 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Iind06G0028170.1 | Terpenoid | BAHD | medium | pass | BAHD__00051__sp_Q7XA86_ZDH11_ARATH |
| Iind06G0028170.2 | Terpenoid | BAHD | medium | pass | BAHD__00051__sp_Q7XA86_ZDH11_ARATH |
| Iind06G0028170.3 | Terpenoid | BAHD | medium | pass | BAHD__00051__sp_Q7XA86_ZDH11_ARATH |
| Iind06G0028280.1 | Terpenoid | BAHD | medium | pass | BAHD__00067__sp_Q9ASU1_DGAT2_ARATH |
| Iind06G0028920.1 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| Iind06G0028920.2 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| Iind06G0028920.3 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| Iind06G0034070.1 | Terpenoid | BAHD | medium | pass | BAHD__00013__sp_B3DN87_ZDH12_ARATH |
| Iind06G0034090.1 | Terpenoid | BAHD | medium | pass | BAHD__00085__sp_Q9M1K5_ZDH13_ARATH |
| Iind06G0034880.1 | Terpenoid | BAHD | medium | pass | BAHD__00058__sp_Q8LG50_LPAT2_ARATH |
| Iind06G0037480.1 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| Iind06G0039970.1 | Terpenoid | BAHD | medium | pass | BAHD__00093__sp_Q9SV07_ASAT1_ARATH |
| IindContig000390000740.1 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| IindContig000390000760.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| IindContig001270002530.1 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| IindContig006190007140.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| IindContig007340009730.1 | Terpenoid | BAHD | medium | pass | BAHD__00094__sp_Q9SYC8_LPAT3_ARATH |
| IindContig007340009740.1 | Terpenoid | BAHD | medium | pass | BAHD__00094__sp_Q9SYC8_LPAT3_ARATH |
| IindContig007510010250.1 | Terpenoid | BAHD | medium | pass | BAHD__00064__sp_Q93ZR6_WSD1_ARATH |
| IindContig007510010260.1 | Terpenoid | BAHD | medium | pass | BAHD__00064__sp_Q93ZR6_WSD1_ARATH |
| IindContig007650010820.1 | Terpenoid | BAHD | medium | pass | BAHD__00064__sp_Q93ZR6_WSD1_ARATH |
| IindContig007650010830.1 | Terpenoid | BAHD | medium | pass | BAHD__00064__sp_Q93ZR6_WSD1_ARATH |
| IindContig008540012840.1 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |