PlantSME Plant secondary metabolism enzyme database

Isatis indigotica (isatis_indigotica)

Imported from atlas release summary for Isatis indigotica.

1891
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.87% Alkaloid pathway 23.53% Phenylpropanoid pathway 21.47% Rosmarinic acid pathway 8.99% Flavonoid pathway 8.83% Steroid pathway 8.3%
Family Distribution
BAHD 7.08% 4CL 5.93% C4H 5.44% C3'H/CYP98A 4.79% POD 4.23% CYP76 3.39% NMT 3.33% IFS 3.28%
Other Families 62.53%
More Families (96)
F3H 135 3.03% T3O 128 2.88% SGD 126 2.83% UGT 112 2.52% 7DLGT 99 2.23% DWF4/CYP90B1 88 1.98% UFGT 84 1.89% SMT1/SMT2/SMT3 82 1.84% CODM/T6ODM 81 1.82% CAD 75 1.69% CYP71 73 1.64% STR 71 1.6% CAS 69 1.55% F3'H/CYP75B 68 1.53% BBE 57 1.28% BR6OX2/CYP85A2 55 1.24% H6H 53 1.19% CSE 52 1.17% TPS 52 1.17% GES 49 1.1% IFR 46 1.03% COMT 43 0.97% LAMT 41 0.92% T16H 40 0.9% IO 39 0.88% CCR 37 0.83% CYP90D1 36 0.81% ANR 35 0.79% RAS 33 0.74% TAT 33 0.74% GS 32 0.72% LAC 32 0.72% TRI/TRII 31 0.7% FNS 31 0.7% NCS 30 0.67% COR 30 0.67% 8HGO 30 0.67% G8O/G8H 28 0.63% F3'5'H/CYP75A 26 0.58% SQE 24 0.54% BR6OX1/CYP85A1 23 0.52% 16OMT 22 0.49% F5H/CYP84A 22 0.49% CPD/CYP90A1 21 0.47% ANS/LDOX 20 0.45% ROT3/CYP90C1 20 0.45% SLS 18 0.4% GGPPS 17 0.38% HCT 16 0.36% CPR 16 0.36% PAL 15 0.34% CYP51G1 15 0.34% AACT 14 0.31% DFR 13 0.29% SQS/FDFT1 13 0.29% PYKS 11 0.25% CYP719 11 0.25% XMT_MXMT_DXMT 11 0.25% FPPS 11 0.25% PMT 10 0.22% CCoAOMT 10 0.22% CNMT 9 0.2% CHI 9 0.2% SMO1/SMO2 9 0.2% CYP80B1 8 0.18% MPO 8 0.18% DXS 8 0.18% CMK/IspE 8 0.18% CHS 7 0.16% MCT/IspD 7 0.16% HDS/IspG 7 0.16% 7DLH 6 0.13% HMGS 6 0.13% TYDC_DDC 5 0.11% FLS 5 0.11% HPPR 5 0.11% DWF7 5 0.11% MVD 5 0.11% HMGR 5 0.11% ADC 4 0.09% CPI1 4 0.09% DWF5 4 0.09% MVK 4 0.09% HDR/IspH 4 0.09% ISY 3 0.07% TDC 3 0.07% DWF1 3 0.07% DET2 3 0.07% IDI 3 0.07% 6OMT_4OMT_SOMT 2 0.04% DXR 2 0.04% PMK 2 0.04% ODC 1 0.02% HYD1 1 0.02% FK 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 546 19 BAHD (267) View species results
Alkaloid pathway 445 21 SGD (119) View species results
Phenylpropanoid pathway 406 13 POD (177) View species results
Rosmarinic acid pathway 170 7 C4H (61) View species results
Flavonoid pathway 167 11 UFGT (64) View species results
Steroid pathway 157 11 SMT1/SMT2/SMT3 (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1477 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 364 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
Iind01G0003240.1 Flavonoid PAL medium pass PAL__00004__sp_P45725_PAL3_ARATH
Iind03G0029070.1 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Iind03G0029070.2 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Iind04G0011110.1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Iind06G0030190.1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Iind01G0003240.1 Phenylpropanoid PAL medium pass PAL__00004__sp_P45725_PAL3_ARATH
Iind03G0029070.1 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Iind03G0029070.2 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Iind04G0011110.1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Iind06G0030190.1 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Iind01G0003240.1 Rosmarinic Acid PAL medium pass PAL__00004__sp_P45725_PAL3_ARATH
Iind03G0029070.1 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Iind03G0029070.2 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Iind04G0011110.1 Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Iind06G0030190.1 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH