Isatis indigotica (isatis_indigotica)
Imported from atlas release summary for Isatis indigotica.
1891
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1891
Candidate Genes
BAHD
7.08%
4CL
5.93%
C4H
5.44%
C3'H/CYP98A
4.79%
POD
4.23%
CYP76
3.39%
NMT
3.33%
IFS
3.28%
Other Families
62.53%
More Families (96)
F3H
135
3.03%
T3O
128
2.88%
SGD
126
2.83%
UGT
112
2.52%
7DLGT
99
2.23%
DWF4/CYP90B1
88
1.98%
UFGT
84
1.89%
SMT1/SMT2/SMT3
82
1.84%
CODM/T6ODM
81
1.82%
CAD
75
1.69%
CYP71
73
1.64%
STR
71
1.6%
CAS
69
1.55%
F3'H/CYP75B
68
1.53%
BBE
57
1.28%
BR6OX2/CYP85A2
55
1.24%
H6H
53
1.19%
CSE
52
1.17%
TPS
52
1.17%
GES
49
1.1%
IFR
46
1.03%
COMT
43
0.97%
LAMT
41
0.92%
T16H
40
0.9%
IO
39
0.88%
CCR
37
0.83%
CYP90D1
36
0.81%
ANR
35
0.79%
RAS
33
0.74%
TAT
33
0.74%
GS
32
0.72%
LAC
32
0.72%
TRI/TRII
31
0.7%
FNS
31
0.7%
NCS
30
0.67%
COR
30
0.67%
8HGO
30
0.67%
G8O/G8H
28
0.63%
F3'5'H/CYP75A
26
0.58%
SQE
24
0.54%
BR6OX1/CYP85A1
23
0.52%
16OMT
22
0.49%
F5H/CYP84A
22
0.49%
CPD/CYP90A1
21
0.47%
ANS/LDOX
20
0.45%
ROT3/CYP90C1
20
0.45%
SLS
18
0.4%
GGPPS
17
0.38%
HCT
16
0.36%
CPR
16
0.36%
PAL
15
0.34%
CYP51G1
15
0.34%
AACT
14
0.31%
DFR
13
0.29%
SQS/FDFT1
13
0.29%
PYKS
11
0.25%
CYP719
11
0.25%
XMT_MXMT_DXMT
11
0.25%
FPPS
11
0.25%
PMT
10
0.22%
CCoAOMT
10
0.22%
CNMT
9
0.2%
CHI
9
0.2%
SMO1/SMO2
9
0.2%
CYP80B1
8
0.18%
MPO
8
0.18%
DXS
8
0.18%
CMK/IspE
8
0.18%
CHS
7
0.16%
MCT/IspD
7
0.16%
HDS/IspG
7
0.16%
7DLH
6
0.13%
HMGS
6
0.13%
TYDC_DDC
5
0.11%
FLS
5
0.11%
HPPR
5
0.11%
DWF7
5
0.11%
MVD
5
0.11%
HMGR
5
0.11%
ADC
4
0.09%
CPI1
4
0.09%
DWF5
4
0.09%
MVK
4
0.09%
HDR/IspH
4
0.09%
ISY
3
0.07%
TDC
3
0.07%
DWF1
3
0.07%
DET2
3
0.07%
IDI
3
0.07%
6OMT_4OMT_SOMT
2
0.04%
DXR
2
0.04%
PMK
2
0.04%
ODC
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 546 | 19 | BAHD (267) | View species results |
| Alkaloid pathway | 445 | 21 | SGD (119) | View species results |
| Phenylpropanoid pathway | 406 | 13 | POD (177) | View species results |
| Rosmarinic acid pathway | 170 | 7 | C4H (61) | View species results |
| Flavonoid pathway | 167 | 11 | UFGT (64) | View species results |
| Steroid pathway | 157 | 11 | SMT1/SMT2/SMT3 (56) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1477 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 364 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Iind05G0012000.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Iind05G0012000.2 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Iind05G0012000.3 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Iind05G0014390.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Iind05G0015280.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Iind05G0015280.2 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Iind05G0015870.1 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| Iind05G0017130.1 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Iind05G0017130.2 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Iind05G0023240.1 | Alkaloid | NMT | low | borderline | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Iind05G0029300.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Iind05G0029300.2 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Iind05G0030860.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Iind05G0032260.1 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Iind05G0032260.2 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Iind05G0032530.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Iind05G0037250.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Iind05G0037250.2 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Iind05G0037640.2 | Alkaloid | NMT | medium | borderline | NMT__00010__sp_A4GE70_DXMT1_COFCA |
| Iind06G0001150.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Iind06G0003590.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Iind06G0004150.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Iind06G0004290.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Iind06G0004350.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Iind06G0007530.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Iind06G0007530.2 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Iind06G0008070.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Iind06G0014010.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Iind06G0018100.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Iind06G0018100.2 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Iind06G0018610.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Iind06G0029250.1 | Alkaloid | NMT | medium | pass | NMT__00062__sp_Q9SCP7_NAMT1_ARATH |
| Iind06G0030050.1 | Alkaloid | NMT | medium | pass | NMT__00062__sp_Q9SCP7_NAMT1_ARATH |
| Iind06G0036700.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Iind06G0036700.2 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Iind06G0036700.3 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Iind06G0038460.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Iind06G0038460.2 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| IindContig000250000530.1 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| IindContig006750008330.1 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| IindContig007080009030.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| IindContig008310012390.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| IindContig009540016650.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| IindContig009720017290.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| IindContig009720017300.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| IindContig009720017320.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| IindContig009720017330.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| IindContig010200018970.1 | Alkaloid | NMT | low | borderline | NMT__00039__sp_Q84W92_ANM13_ARATH |