Ocimum basilicum (ocimum_basilicum)
Imported from atlas release summary for Ocimum basilicum.
4737
Family-Level Assignments
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
4737
Family-Level Assignments
C4H
8.12%
C3'H/CYP98A
6.8%
BAHD
6.43%
CYP76
4.51%
T3O
4.44%
IFS
4.14%
UGT
3.48%
7DLGT
3.34%
Other Families
58.74%
More Families (97)
UFGT
426
3.29%
F3'H/CYP75B
351
2.71%
4CL
321
2.48%
BR6OX2/CYP85A2
309
2.38%
CYP71
290
2.24%
TPS
282
2.18%
POD
263
2.03%
F3H
260
2.01%
DWF4/CYP90B1
253
1.95%
HCT
243
1.88%
GES
242
1.87%
CAD
203
1.57%
LAC
201
1.55%
CODM/T6ODM
167
1.29%
BBE
161
1.24%
RAS
155
1.2%
T16H
151
1.17%
CAS
150
1.16%
G8O/G8H
142
1.1%
NMT
141
1.09%
CYP90D1
140
1.08%
TAT
136
1.05%
PMT
128
0.99%
STR
117
0.9%
H6H
104
0.8%
F5H/CYP84A
101
0.78%
SMT1/SMT2/SMT3
93
0.72%
PYKS
91
0.7%
GS
91
0.7%
FNS
91
0.7%
CYP51G1
91
0.7%
ANR
90
0.69%
LAMT
87
0.67%
TRI/TRII
78
0.6%
IO
78
0.6%
NCS
78
0.6%
COMT
78
0.6%
IFR
77
0.59%
F3'5'H/CYP75A
69
0.53%
7DLH
66
0.51%
CSE
64
0.49%
CCR
55
0.42%
SLS
54
0.42%
16OMT
53
0.41%
BR6OX1/CYP85A1
53
0.41%
CPD/CYP90A1
48
0.37%
8HGO
37
0.29%
SGD
37
0.29%
COR
36
0.28%
PAL
36
0.28%
CCoAOMT
35
0.27%
CYP80B1
31
0.24%
6OMT_4OMT_SOMT
28
0.22%
DFR
28
0.22%
CHS
25
0.19%
CPR
23
0.18%
HPPR
23
0.18%
ROT3/CYP90C1
21
0.16%
FPPS
21
0.16%
CNMT
19
0.15%
MPO
18
0.14%
ANS/LDOX
17
0.13%
MVK
17
0.13%
HMGR
16
0.12%
TYDC_DDC
15
0.12%
ISY
15
0.12%
GGPPS
14
0.11%
AACT
13
0.1%
CYP719
12
0.09%
DXR
12
0.09%
HDR/IspH
12
0.09%
MVD
11
0.08%
DXS
11
0.08%
SQS/FDFT1
10
0.08%
TDC
9
0.07%
CHI
8
0.06%
SQE
7
0.05%
SMO1/SMO2
7
0.05%
IDI
7
0.05%
CYP80F1
6
0.05%
DET2
6
0.05%
ADC
5
0.04%
XMT_MXMT_DXMT
5
0.04%
HYD1
5
0.04%
HMGS
5
0.04%
FLS
3
0.02%
CPI1
3
0.02%
CMK/IspE
3
0.02%
PMK
3
0.02%
HDS/IspG
3
0.02%
ODC
2
0.02%
DWF5
2
0.02%
DWF7
2
0.02%
DWF1
2
0.02%
MDS/IspF
2
0.02%
MCT/IspD
2
0.02%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Family-Level Assignments | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1561 | 19 | BAHD (533) | View species results |
| Alkaloid pathway | 913 | 24 | GES (214) | View species results |
| Phenylpropanoid pathway | 903 | 13 | POD (251) | View species results |
| Rosmarinic acid pathway | 611 | 7 | C4H (314) | View species results |
| Flavonoid pathway | 564 | 15 | UFGT (391) | View species results |
| Steroid pathway | 185 | 12 | CAS (93) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Family-level assignments | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 5896 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 1231 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| ocimum_basilicum_677.g13.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| ocimum_basilicum_677.g14.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| ocimum_basilicum_683.g18.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| ocimum_basilicum_697.g54.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| ocimum_basilicum_706.g29.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| ocimum_basilicum_715.g9.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| ocimum_basilicum_721.g29.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| ocimum_basilicum_726.g79.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| ocimum_basilicum_728.g6.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| ocimum_basilicum_741.g24.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| ocimum_basilicum_751.g18.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| ocimum_basilicum_757.g157.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| ocimum_basilicum_757.g217.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| ocimum_basilicum_804.g5.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| ocimum_basilicum_888.g97.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| ocimum_basilicum_905.g10.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| ocimum_basilicum_925.g29.t1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |