PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

4737
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status Best Target
ocimum_basilicum_543.g68.t1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
ocimum_basilicum_543.g75.t1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
ocimum_basilicum_543.g76.t1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
ocimum_basilicum_543.g77.t1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
ocimum_basilicum_543.g79.t1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
ocimum_basilicum_543.g80.t1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
ocimum_basilicum_546711.g1.t1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
ocimum_basilicum_546712.g1.t1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
ocimum_basilicum_548344.g6.t1 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
ocimum_basilicum_548345.g6.t1 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
ocimum_basilicum_675.g15.t1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
ocimum_basilicum_681.g74.t1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
ocimum_basilicum_715.g47.t1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
ocimum_basilicum_757.g208.t1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH