PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

5408
Candidate Protein Records
4737
Pathway-Level Records
12960
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'H/CYP75B
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Protein/Isoform Record Pathway Family Confidence Status
ocimum_basilicum_1003.g1.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1024.g19.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_1102.g6.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1168.g5.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1258.g5.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_1385.g12.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_1408.g2.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1521.g1.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1521.g12.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1521.g20.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1568.g35.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1583.g82.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1701.g210.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_1721.g6.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1721.g8.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1737.g16.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1842.g64.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1846.g1.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1854.g8.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_1874.g26.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1874.g29.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1874.g35.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1925.g20.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1945.g15.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1945.g38.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1947.g52.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_1950.g57.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1950.g59.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1950.g63.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1950.g64.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1950.g67.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1950.g68.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1950.g75.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1950.g76.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1953.g50.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1953.g63.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1953.g74.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1953.g78.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1953.g80.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1964.g187.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_1968.g132.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_1972.g201.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1973.g49.t1 Flavonoid F3'H/CYP75B medium pass
ocimum_basilicum_1980.g51.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1982.g18.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1982.g19.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_1982.g20.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_1982.g23.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_1982.g6.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_1983.g42.t1 Flavonoid F3'H/CYP75B medium borderline