PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

5408
Candidate Protein Records
4737
Pathway-Level Records
12960
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'H/CYP75B
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Protein/Isoform Record Pathway Family Confidence Status
ocimum_basilicum_379558.g12.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_379741.g4.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_379741.g5.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_379861.g4.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_380367.g38.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_380370.g2.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_380515.g1.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_380515.g9.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_380748.g9.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_380913.g5.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_380995.g3.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_381297.g2.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_381419.g16.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_381419.g25.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_381419.g26.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_381419.g31.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_381419.g32.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_381642.g2.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_381712.g1.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_381732.g2.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_381947.g7.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_381952.g2.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_382181.g65.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_382287.g23.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_382438.g58.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_382462.g20.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_382614.g16.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_382614.g9.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_382655.g31.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_382708.g43.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_382836.g36.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_382836.g5.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_382855.g33.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_382957.g30.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383013.g50.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383013.g77.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383013.g79.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383013.g80.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383069.g14.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383069.g16.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383210.g2.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383220.g12.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383226.g51.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383238.g31.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383279.g95.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383292.g23.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383415.g4.t1 Flavonoid F3'H/CYP75B low borderline
ocimum_basilicum_383458.g1.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383458.g2.t1 Flavonoid F3'H/CYP75B medium borderline
ocimum_basilicum_383520.g6.t1 Flavonoid F3'H/CYP75B medium borderline