PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

4737
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
ocimum_basilicum_384095.g85.t1 Alkaloid GS high pass
ocimum_basilicum_384876.g2.t1 Alkaloid GS low borderline
ocimum_basilicum_384923.g12.t1 Alkaloid GS high pass
ocimum_basilicum_384923.g13.t1 Alkaloid GS high pass
ocimum_basilicum_384923.g14.t1 Alkaloid GS high pass
ocimum_basilicum_384923.g16.t1 Alkaloid GS high pass
ocimum_basilicum_384923.g18.t1 Alkaloid GS high pass
ocimum_basilicum_384923.g19.t1 Alkaloid GS high pass
ocimum_basilicum_384923.g20.t1 Alkaloid GS high pass
ocimum_basilicum_384923.g21.t1 Alkaloid GS high pass
ocimum_basilicum_384923.g22.t1 Alkaloid GS medium pass
ocimum_basilicum_385022.g12.t1 Alkaloid GS low borderline
ocimum_basilicum_385022.g15.t1 Alkaloid GS low borderline
ocimum_basilicum_385022.g17.t1 Alkaloid GS low borderline
ocimum_basilicum_385022.g21.t1 Alkaloid GS low borderline
ocimum_basilicum_385022.g22.t1 Alkaloid GS low borderline
ocimum_basilicum_385022.g23.t1 Alkaloid GS low borderline
ocimum_basilicum_385022.g8.t1 Alkaloid GS low borderline
ocimum_basilicum_385149.g9.t1 Alkaloid GS high pass
ocimum_basilicum_385173.g2.t1 Alkaloid GS low borderline
ocimum_basilicum_385173.g3.t1 Alkaloid GS low borderline
ocimum_basilicum_385173.g4.t1 Alkaloid GS low borderline
ocimum_basilicum_385244.g135.t1 Alkaloid GS low borderline
ocimum_basilicum_385459.g10.t1 Alkaloid GS low borderline
ocimum_basilicum_385459.g11.t1 Alkaloid GS low borderline
ocimum_basilicum_385459.g12.t1 Alkaloid GS low borderline
ocimum_basilicum_385612.g51.t1 Alkaloid GS low borderline
ocimum_basilicum_385938.g34.t1 Alkaloid GS low borderline
ocimum_basilicum_481.g291.t1 Alkaloid GS low borderline
ocimum_basilicum_482.g69.t1 Alkaloid GS low borderline
ocimum_basilicum_504921.g2.t1 Alkaloid GS low borderline
ocimum_basilicum_504923.g2.t1 Alkaloid GS low borderline
ocimum_basilicum_507.g124.t1 Alkaloid GS low borderline
ocimum_basilicum_517.g120.t1 Alkaloid GS low borderline
ocimum_basilicum_523.g85.t1 Alkaloid GS high pass
ocimum_basilicum_555.g76.t1 Alkaloid GS low borderline
ocimum_basilicum_570345.g2.t1 Alkaloid GS high pass
ocimum_basilicum_570346.g2.t1 Alkaloid GS high pass
ocimum_basilicum_714.g9.t1 Alkaloid GS high pass
ocimum_basilicum_754.g16.t1 Alkaloid GS high pass
ocimum_basilicum_757.g294.t1 Alkaloid GS medium pass