PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

4737
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
ocimum_basilicum_1029.g15.t1 Alkaloid PYKS low borderline
ocimum_basilicum_1167.g1.t1 Alkaloid PYKS high pass
ocimum_basilicum_1225.g22.t1 Alkaloid PYKS low borderline
ocimum_basilicum_1228.g33.t1 Alkaloid PYKS low borderline
ocimum_basilicum_1275.g7.t1 Alkaloid PYKS low borderline
ocimum_basilicum_1568.g59.t1 Alkaloid PYKS high pass
ocimum_basilicum_1641.g20.t1 Alkaloid PYKS low borderline
ocimum_basilicum_1830.g16.t1 Alkaloid PYKS high pass
ocimum_basilicum_1910.g66.t1 Alkaloid PYKS low borderline
ocimum_basilicum_1910.g68.t1 Alkaloid PYKS low borderline
ocimum_basilicum_1910.g73.t1 Alkaloid PYKS low borderline
ocimum_basilicum_1940.g35.t1 Alkaloid PYKS low borderline
ocimum_basilicum_227123.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_335740.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_354461.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_358326.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_366400.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_366720.g4.t1 Alkaloid PYKS low borderline
ocimum_basilicum_371.g46.t1 Alkaloid PYKS low borderline
ocimum_basilicum_371576.g1.t1 Alkaloid PYKS high pass
ocimum_basilicum_375809.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_379969.g33.t1 Alkaloid PYKS high pass
ocimum_basilicum_379969.g35.t1 Alkaloid PYKS high pass
ocimum_basilicum_380048.g4.t1 Alkaloid PYKS low borderline
ocimum_basilicum_380370.g11.t1 Alkaloid PYKS low borderline
ocimum_basilicum_380887.g24.t1 Alkaloid PYKS low borderline
ocimum_basilicum_381425.g35.t1 Alkaloid PYKS low borderline
ocimum_basilicum_381713.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_381783.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_382462.g8.t1 Alkaloid PYKS low borderline
ocimum_basilicum_382592.g3.t1 Alkaloid PYKS low borderline
ocimum_basilicum_382790.g17.t1 Alkaloid PYKS low borderline
ocimum_basilicum_382992.g90.t1 Alkaloid PYKS low borderline
ocimum_basilicum_382997.g52.t1 Alkaloid PYKS low borderline
ocimum_basilicum_383062.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_383062.g6.t1 Alkaloid PYKS low borderline
ocimum_basilicum_383121.g14.t1 Alkaloid PYKS medium pass
ocimum_basilicum_383134.g32.t1 Alkaloid PYKS low borderline
ocimum_basilicum_383263.g97.t1 Alkaloid PYKS low borderline
ocimum_basilicum_383292.g37.t1 Alkaloid PYKS low borderline
ocimum_basilicum_383332.g86.t1 Alkaloid PYKS low borderline
ocimum_basilicum_383565.g4.t1 Alkaloid PYKS low borderline
ocimum_basilicum_383637.g43.t1 Alkaloid PYKS low borderline
ocimum_basilicum_383684.g32.t1 Alkaloid PYKS low borderline
ocimum_basilicum_383684.g33.t1 Alkaloid PYKS low borderline
ocimum_basilicum_383685.g24.t1 Alkaloid PYKS low borderline
ocimum_basilicum_383706.g22.t1 Alkaloid PYKS low borderline
ocimum_basilicum_383788.g132.t1 Alkaloid PYKS low borderline
ocimum_basilicum_383923.g69.t1 Alkaloid PYKS low borderline
ocimum_basilicum_384045.g5.t1 Alkaloid PYKS low borderline