PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

4737
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
ocimum_basilicum_384097.g101.t1 Alkaloid PYKS low borderline
ocimum_basilicum_384192.g38.t1 Alkaloid PYKS low borderline
ocimum_basilicum_384222.g87.t1 Alkaloid PYKS low borderline
ocimum_basilicum_384573.g2.t1 Alkaloid PYKS low borderline
ocimum_basilicum_384948.g215.t1 Alkaloid PYKS low borderline
ocimum_basilicum_384969.g20.t1 Alkaloid PYKS low borderline
ocimum_basilicum_385172.g5.t1 Alkaloid PYKS high pass
ocimum_basilicum_385223.g58.t1 Alkaloid PYKS low borderline
ocimum_basilicum_385524.g44.t1 Alkaloid PYKS high pass
ocimum_basilicum_385671.g99.t1 Alkaloid PYKS low borderline
ocimum_basilicum_385708.g14.t1 Alkaloid PYKS high pass
ocimum_basilicum_423932.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_423933.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_454.g110.t1 Alkaloid PYKS low borderline
ocimum_basilicum_456.g73.t1 Alkaloid PYKS low borderline
ocimum_basilicum_486.g66.t1 Alkaloid PYKS high pass
ocimum_basilicum_506.g16.t1 Alkaloid PYKS medium pass
ocimum_basilicum_506.g7.t1 Alkaloid PYKS high pass
ocimum_basilicum_507.g96.t1 Alkaloid PYKS low borderline
ocimum_basilicum_507.g97.t1 Alkaloid PYKS low borderline
ocimum_basilicum_515.g89.t1 Alkaloid PYKS low borderline
ocimum_basilicum_541080.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_541080.g2.t1 Alkaloid PYKS low borderline
ocimum_basilicum_541083.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_543052.g2.t1 Alkaloid PYKS low borderline
ocimum_basilicum_543053.g2.t1 Alkaloid PYKS low borderline
ocimum_basilicum_549.g252.t1 Alkaloid PYKS low borderline
ocimum_basilicum_553012.g3.t1 Alkaloid PYKS low borderline
ocimum_basilicum_553013.g2.t1 Alkaloid PYKS low borderline
ocimum_basilicum_556.g187.t1 Alkaloid PYKS low borderline
ocimum_basilicum_562.g40.t1 Alkaloid PYKS low borderline
ocimum_basilicum_668.g104.t1 Alkaloid PYKS low borderline
ocimum_basilicum_670.g4.t1 Alkaloid PYKS low borderline
ocimum_basilicum_712.g96.t1 Alkaloid PYKS low borderline
ocimum_basilicum_715.g29.t1 Alkaloid PYKS high pass
ocimum_basilicum_723.g60.t1 Alkaloid PYKS low borderline
ocimum_basilicum_723.g65.t1 Alkaloid PYKS low borderline
ocimum_basilicum_731.g33.t1 Alkaloid PYKS medium pass
ocimum_basilicum_738.g43.t1 Alkaloid PYKS low borderline
ocimum_basilicum_752.g165.t1 Alkaloid PYKS low borderline
ocimum_basilicum_805.g84.t1 Alkaloid PYKS low borderline