PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

5408
Candidate Protein Records
4737
Pathway-Level Records
12960
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
ocimum_basilicum_515.g89.t1 Alkaloid PYKS low borderline
ocimum_basilicum_541080.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_541080.g2.t1 Alkaloid PYKS low borderline
ocimum_basilicum_541083.g1.t1 Alkaloid PYKS low borderline
ocimum_basilicum_543052.g2.t1 Alkaloid PYKS low borderline
ocimum_basilicum_543053.g2.t1 Alkaloid PYKS low borderline
ocimum_basilicum_549.g252.t1 Alkaloid PYKS low borderline
ocimum_basilicum_553012.g3.t1 Alkaloid PYKS low borderline
ocimum_basilicum_553013.g2.t1 Alkaloid PYKS low borderline
ocimum_basilicum_556.g187.t1 Alkaloid PYKS low borderline
ocimum_basilicum_562.g40.t1 Alkaloid PYKS low borderline
ocimum_basilicum_668.g104.t1 Alkaloid PYKS low borderline
ocimum_basilicum_670.g4.t1 Alkaloid PYKS low borderline
ocimum_basilicum_712.g96.t1 Alkaloid PYKS low borderline
ocimum_basilicum_715.g29.t1 Alkaloid PYKS high pass
ocimum_basilicum_723.g60.t1 Alkaloid PYKS low borderline
ocimum_basilicum_723.g65.t1 Alkaloid PYKS low borderline
ocimum_basilicum_731.g33.t1 Alkaloid PYKS medium pass
ocimum_basilicum_738.g43.t1 Alkaloid PYKS low borderline
ocimum_basilicum_752.g165.t1 Alkaloid PYKS low borderline
ocimum_basilicum_805.g84.t1 Alkaloid PYKS low borderline
ocimum_basilicum_1225.g10.t1 Alkaloid SGD medium pass
ocimum_basilicum_1225.g11.t1 Alkaloid SGD medium pass
ocimum_basilicum_1225.g12.t1 Alkaloid SGD medium pass
ocimum_basilicum_1225.g15.t1 Alkaloid SGD medium pass
ocimum_basilicum_1225.g6.t1 Alkaloid SGD medium pass
ocimum_basilicum_1225.g7.t1 Alkaloid SGD medium pass
ocimum_basilicum_1879.g2.t1 Alkaloid SGD low borderline
ocimum_basilicum_1938.g36.t1 Alkaloid SGD medium pass
ocimum_basilicum_379493.g16.t1 Alkaloid SGD medium pass
ocimum_basilicum_380860.g16.t1 Alkaloid SGD medium pass
ocimum_basilicum_380952.g5.t1 Alkaloid SGD medium pass
ocimum_basilicum_381812.g4.t1 Alkaloid SGD medium pass
ocimum_basilicum_381982.g10.t1 Alkaloid SGD medium pass
ocimum_basilicum_382106.g12.t1 Alkaloid SGD medium pass
ocimum_basilicum_382670.g4.t1 Alkaloid SGD medium pass
ocimum_basilicum_382847.g110.t1 Alkaloid SGD medium pass
ocimum_basilicum_382917.g32.t1 Alkaloid SGD medium pass
ocimum_basilicum_383347.g42.t1 Alkaloid SGD medium pass
ocimum_basilicum_383347.g43.t1 Alkaloid SGD medium pass
ocimum_basilicum_383840.g2.t1 Alkaloid SGD low borderline
ocimum_basilicum_383906.g18.t1 Alkaloid SGD medium pass
ocimum_basilicum_384444.g2.t1 Alkaloid SGD medium pass
ocimum_basilicum_384797.g7.t1 Alkaloid SGD medium pass
ocimum_basilicum_385346.g160.t1 Alkaloid SGD medium pass
ocimum_basilicum_385733.g8.t1 Alkaloid SGD medium pass
ocimum_basilicum_521.g78.t1 Alkaloid SGD low borderline
ocimum_basilicum_549.g258.t1 Alkaloid SGD medium pass
ocimum_basilicum_549.g259.t1 Alkaloid SGD medium pass
ocimum_basilicum_549.g260.t1 Alkaloid SGD medium pass