PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

5408
Candidate Protein Records
4737
Pathway-Level Records
12960
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
ocimum_basilicum_537254.g1.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_537254.g2.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_537259.g1.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_537259.g2.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_540280.g2.t1 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
ocimum_basilicum_540284.g2.t1 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
ocimum_basilicum_542.g37.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_544736.g3.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_544737.g3.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_550.g46.t1 Alkaloid STR medium pass STR__00002__sp_P68175_STSY_RAUSE
ocimum_basilicum_553.g3.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_565.g16.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_650.g8.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_661.g19.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_664.g8.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_677.g51.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_677.g52.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_698.g39.t1 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_709.g47.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_723.g105.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_740.g20.t1 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_743.g3.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_743.g5.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_756.g90.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_757.g213.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_757.g215.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_845.g2.t1 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
ocimum_basilicum_850.g4.t1 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_884.g21.t1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ocimum_basilicum_1259.g1.t1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
ocimum_basilicum_1276.g38.t1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
ocimum_basilicum_1538.g4.t1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
ocimum_basilicum_1551.g114.t1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
ocimum_basilicum_1583.g37.t1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
ocimum_basilicum_1822.g13.t1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
ocimum_basilicum_1834.g9.t1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
ocimum_basilicum_1842.g63.t1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
ocimum_basilicum_1869.g23.t1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
ocimum_basilicum_1874.g14.t1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
ocimum_basilicum_1874.g16.t1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
ocimum_basilicum_1874.g19.t1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
ocimum_basilicum_1874.g20.t1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
ocimum_basilicum_1924.g92.t1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
ocimum_basilicum_1949.g120.t1 Alkaloid T16H low borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
ocimum_basilicum_1950.g60.t1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
ocimum_basilicum_1950.g61.t1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
ocimum_basilicum_1950.g62.t1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
ocimum_basilicum_1950.g63.t1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
ocimum_basilicum_1950.g64.t1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
ocimum_basilicum_1950.g76.t1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO