PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

5408
Candidate Protein Records
4737
Pathway-Level Records
12960
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ocimum_basilicum_1953.g74.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1953.g78.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1953.g80.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1953.g81.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1953.g82.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1953.g83.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1953.g84.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1958.g16.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1958.g65.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1964.g94.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1972.g62.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1972.g71.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1972.g72.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1973.g20.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1973.g27.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1983.g41.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1984.g18.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1984.g6.t1 Alkaloid T3O medium borderline
ocimum_basilicum_227082.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_227082.g2.t1 Alkaloid T3O medium borderline
ocimum_basilicum_299279.g2.t1 Alkaloid T3O medium pass
ocimum_basilicum_302838.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_308.g69.t1 Alkaloid T3O low borderline
ocimum_basilicum_313193.g2.t1 Alkaloid T3O medium borderline
ocimum_basilicum_313193.g3.t1 Alkaloid T3O medium borderline
ocimum_basilicum_325279.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_338905.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_338960.g2.t1 Alkaloid T3O medium borderline
ocimum_basilicum_343530.g3.t1 Alkaloid T3O medium borderline
ocimum_basilicum_346423.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_347838.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_348218.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_348218.g2.t1 Alkaloid T3O medium borderline
ocimum_basilicum_348218.g3.t1 Alkaloid T3O medium borderline
ocimum_basilicum_348920.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_350607.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_351064.g1.t1 Alkaloid T3O medium pass
ocimum_basilicum_353691.g1.t1 Alkaloid T3O medium pass
ocimum_basilicum_354132.g2.t1 Alkaloid T3O medium borderline
ocimum_basilicum_359291.g1.t1 Alkaloid T3O medium pass
ocimum_basilicum_359536.g3.t1 Alkaloid T3O medium borderline
ocimum_basilicum_360142.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_363376.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_363632.g3.t1 Alkaloid T3O medium borderline
ocimum_basilicum_364613.g3.t1 Alkaloid T3O medium borderline
ocimum_basilicum_364722.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_366495.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_366918.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_366964.g1.t1 Alkaloid T3O medium borderline
ocimum_basilicum_368858.g1.t1 Alkaloid T3O medium borderline