PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

5408
Candidate Protein Records
4737
Pathway-Level Records
12960
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ocimum_basilicum_923.g6.t1 Alkaloid T3O medium borderline
ocimum_basilicum_935.g187.t1 Alkaloid T3O medium borderline
ocimum_basilicum_935.g189.t1 Alkaloid T3O medium borderline
ocimum_basilicum_935.g190.t1 Alkaloid T3O medium borderline
ocimum_basilicum_957.g13.t1 Alkaloid T3O medium borderline
ocimum_basilicum_957.g15.t1 Alkaloid T3O medium borderline
ocimum_basilicum_1040.g7.t1 Alkaloid TDC medium borderline
ocimum_basilicum_1873.g87.t1 Alkaloid TDC low borderline
ocimum_basilicum_1975.g183.t1 Alkaloid TDC low borderline
ocimum_basilicum_382430.g24.t1 Alkaloid TDC medium borderline
ocimum_basilicum_382680.g53.t1 Alkaloid TDC medium borderline
ocimum_basilicum_383141.g1.t1 Alkaloid TDC medium borderline
ocimum_basilicum_385609.g3.t1 Alkaloid TDC low borderline
ocimum_basilicum_539277.g10.t1 Alkaloid TDC low borderline
ocimum_basilicum_709.g34.t1 Alkaloid TDC low borderline
ocimum_basilicum_1081.g62.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_1322.g5.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_1417.g16.t1 Alkaloid TRI/TRII low borderline
ocimum_basilicum_1417.g22.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_1516.g5.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_1585.g28.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_1774.g40.t1 Alkaloid TRI/TRII low borderline
ocimum_basilicum_1812.g2.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_1824.g26.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_1929.g3.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_1938.g12.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_1964.g120.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_1972.g230.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_1979.g61.t1 Alkaloid TRI/TRII low borderline
ocimum_basilicum_222549.g1.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_308.g233.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_320113.g1.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_348150.g1.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_366992.g1.t1 Alkaloid TRI/TRII low borderline
ocimum_basilicum_367024.g4.t1 Alkaloid TRI/TRII low borderline
ocimum_basilicum_374935.g1.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_375.g105.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_377404.g2.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_378212.g1.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_378212.g3.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_378354.g19.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_378770.g3.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_379.g56.t1 Alkaloid TRI/TRII medium borderline
ocimum_basilicum_381167.g12.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_381592.g33.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_381592.g34.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_381592.g36.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_382082.g11.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_382378.g30.t1 Alkaloid TRI/TRII medium pass
ocimum_basilicum_382618.g12.t1 Alkaloid TRI/TRII medium pass