PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

5408
Candidate Protein Records
4737
Pathway-Level Records
12960
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ocimum_basilicum_748.g125.t1 Steroid BR6OX2/CYP85A2 low borderline
ocimum_basilicum_749.g32.t1 Steroid BR6OX2/CYP85A2 low borderline
ocimum_basilicum_749.g45.t1 Steroid BR6OX2/CYP85A2 low borderline
ocimum_basilicum_749.g48.t1 Steroid BR6OX2/CYP85A2 low borderline
ocimum_basilicum_755.g42.t1 Steroid BR6OX2/CYP85A2 low borderline
ocimum_basilicum_755.g45.t1 Steroid BR6OX2/CYP85A2 low borderline
ocimum_basilicum_755.g49.t1 Steroid BR6OX2/CYP85A2 low borderline
ocimum_basilicum_757.g75.t1 Steroid BR6OX2/CYP85A2 low borderline
ocimum_basilicum_844.g1.t1 Steroid BR6OX2/CYP85A2 low borderline
ocimum_basilicum_865.g13.t1 Steroid BR6OX2/CYP85A2 low borderline
ocimum_basilicum_867.g15.t1 Steroid BR6OX2/CYP85A2 low borderline
ocimum_basilicum_888.g17.t1 Steroid BR6OX2/CYP85A2 low borderline
ocimum_basilicum_1000.g26.t1 Steroid CAS medium pass
ocimum_basilicum_1032.g13.t1 Steroid CAS medium pass
ocimum_basilicum_1032.g38.t1 Steroid CAS low borderline
ocimum_basilicum_1062.g27.t1 Steroid CAS medium pass
ocimum_basilicum_1072.g1.t1 Steroid CAS low borderline
ocimum_basilicum_1204.g3.t1 Steroid CAS medium pass
ocimum_basilicum_1212.g7.t1 Steroid CAS medium pass
ocimum_basilicum_1231.g1.t1 Steroid CAS medium pass
ocimum_basilicum_1231.g4.t1 Steroid CAS low borderline
ocimum_basilicum_1242.g52.t1 Steroid CAS low borderline
ocimum_basilicum_1298.g2.t1 Steroid CAS medium pass
ocimum_basilicum_1437.g14.t1 Steroid CAS low borderline
ocimum_basilicum_1513.g10.t1 Steroid CAS medium pass
ocimum_basilicum_1521.g15.t1 Steroid CAS medium pass
ocimum_basilicum_1521.g16.t1 Steroid CAS medium pass
ocimum_basilicum_1521.g18.t1 Steroid CAS medium pass
ocimum_basilicum_1574.g25.t1 Steroid CAS low borderline
ocimum_basilicum_1574.g67.t1 Steroid CAS low borderline
ocimum_basilicum_1574.g71.t1 Steroid CAS low borderline
ocimum_basilicum_1593.g71.t1 Steroid CAS medium pass
ocimum_basilicum_1719.g26.t1 Steroid CAS medium pass
ocimum_basilicum_1811.g1.t1 Steroid CAS medium pass
ocimum_basilicum_1824.g34.t1 Steroid CAS medium pass
ocimum_basilicum_1864.g3.t1 Steroid CAS medium pass
ocimum_basilicum_1873.g23.t1 Steroid CAS medium pass
ocimum_basilicum_1873.g27.t1 Steroid CAS medium pass
ocimum_basilicum_1896.g31.t1 Steroid CAS medium pass
ocimum_basilicum_1897.g1.t1 Steroid CAS low borderline
ocimum_basilicum_1897.g2.t1 Steroid CAS low borderline
ocimum_basilicum_1897.g8.t1 Steroid CAS low borderline
ocimum_basilicum_1913.g46.t1 Steroid CAS low borderline
ocimum_basilicum_1945.g53.t1 Steroid CAS medium pass
ocimum_basilicum_1973.g136.t1 Steroid CAS medium pass
ocimum_basilicum_307925.g1.t1 Steroid CAS medium pass
ocimum_basilicum_313383.g1.t1 Steroid CAS low borderline
ocimum_basilicum_336010.g2.t1 Steroid CAS low borderline
ocimum_basilicum_337438.g1.t1 Steroid CAS medium pass
ocimum_basilicum_337942.g3.t1 Steroid CAS medium pass