PlantSME Plant secondary metabolism enzyme database

Oryza coarctata (oryza_coarctata)

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Imported from atlas release summary for Oryza coarctata.

1287
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 347 20 BAHD (149) View species results
Phenylpropanoid pathway 344 12 POD (178) View species results
Alkaloid pathway 254 19 NMT (49) View species results
Flavonoid pathway 150 14 UFGT (67) View species results
Rosmarinic acid pathway 110 7 C4H (40) View species results
Steroid pathway 82 10 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 261 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
oryza_coarctata_PC_07697 Steroid CYP90D1 low borderline
oryza_coarctata_PC_14433 Steroid CYP90D1 medium borderline
oryza_coarctata_PC_15431 Steroid CYP90D1 medium borderline
oryza_coarctata_PC_15761 Steroid CYP90D1 low borderline
oryza_coarctata_PC_16180 Steroid CYP90D1 low borderline
oryza_coarctata_PC_18190 Steroid CYP90D1 medium borderline
oryza_coarctata_PC_19236 Steroid CYP90D1 medium borderline
oryza_coarctata_PC_20837 Steroid CYP90D1 low borderline
oryza_coarctata_PC_23649 Steroid CYP90D1 low borderline
oryza_coarctata_PC_24084 Steroid CYP90D1 low borderline
oryza_coarctata_PC_24198 Steroid CYP90D1 low borderline
oryza_coarctata_PC_27095 Steroid CYP90D1 medium borderline
oryza_coarctata_PC_28407 Steroid CYP90D1 medium borderline
oryza_coarctata_PC_30337 Steroid CYP90D1 low borderline
oryza_coarctata_PC_30994 Steroid CYP90D1 low borderline
oryza_coarctata_PC_36366 Steroid CYP90D1 low borderline
oryza_coarctata_PC_39611 Steroid CYP90D1 medium borderline
oryza_coarctata_PC_41051 Steroid CYP90D1 low borderline
oryza_coarctata_PC_44208 Steroid CYP90D1 low borderline
oryza_coarctata_PC_44210 Steroid CYP90D1 low borderline
oryza_coarctata_PC_45931 Steroid CYP90D1 medium borderline
oryza_coarctata_PC_47512 Steroid CYP90D1 low borderline
oryza_coarctata_PC_48926 Steroid CYP90D1 low borderline
oryza_coarctata_PC_50555 Steroid CYP90D1 medium borderline
oryza_coarctata_PC_27569 Steroid DET2 low borderline
oryza_coarctata_PC_36144 Steroid DET2 medium pass
oryza_coarctata_PC_15873 Steroid DWF1 low borderline
oryza_coarctata_PC_41042 Steroid DWF1 low borderline
oryza_coarctata_PC_50398 Steroid DWF1 low borderline
oryza_coarctata_PC_00492 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_00495 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_03675 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_05535 Steroid DWF4/CYP90B1 medium borderline
oryza_coarctata_PC_05988 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_06892 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_07856 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_08348 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_08410 Steroid DWF4/CYP90B1 medium borderline
oryza_coarctata_PC_08898 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_10467 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_11126 Steroid DWF4/CYP90B1 medium borderline
oryza_coarctata_PC_11558 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_12467 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_12468 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_13270 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_13345 Steroid DWF4/CYP90B1 medium borderline
oryza_coarctata_PC_13468 Steroid DWF4/CYP90B1 medium borderline
oryza_coarctata_PC_14648 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_14653 Steroid DWF4/CYP90B1 low borderline
oryza_coarctata_PC_14692 Steroid DWF4/CYP90B1 low borderline