PlantSME Plant secondary metabolism enzyme database

Plagiochila semidecurrens (plagiochila_semidecurrens)

Imported from atlas release summary for Plagiochila semidecurrens.

683
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (93)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 188 12 POD (84) View species results
Terpenoid pathway 169 17 BAHD (62) View species results
Alkaloid pathway 132 18 NMT (21) View species results
Flavonoid pathway 85 10 UFGT (42) View species results
Rosmarinic acid pathway 72 7 C4H (35) View species results
Steroid pathway 37 13 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 633 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 144 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status
Psem4435150228990 Phenylpropanoid CSE medium pass
Psem4440680236010 Phenylpropanoid CSE medium pass
Psem4444000240270 Phenylpropanoid CSE medium pass
Psem4446590244170 Phenylpropanoid CSE medium pass
Psem4452430252680 Phenylpropanoid CSE medium pass
Psem4467160272810 Phenylpropanoid CSE medium pass
Psem3205570035340 Phenylpropanoid F5H/CYP84A low borderline
Psem3948770085190 Phenylpropanoid F5H/CYP84A medium pass
Psem3959470089070 Phenylpropanoid F5H/CYP84A medium borderline
Psem3972580091470 Phenylpropanoid F5H/CYP84A medium borderline
Psem4079200107020 Phenylpropanoid F5H/CYP84A medium borderline
Psem4447070244810 Phenylpropanoid F5H/CYP84A medium borderline
Psem4459840262740 Phenylpropanoid F5H/CYP84A medium borderline
Psem10390001530 Phenylpropanoid HCT low borderline
Psem3283280041000 Phenylpropanoid HCT low borderline
Psem4162770120430 Phenylpropanoid HCT medium pass
Psem4224290127630 Phenylpropanoid HCT medium pass
Psem4228150128400 Phenylpropanoid HCT medium pass
Psem4248100131960 Phenylpropanoid HCT medium pass
Psem4321710149560 Phenylpropanoid HCT low borderline
Psem4381860179150 Phenylpropanoid HCT medium pass
Psem4397440191340 Phenylpropanoid HCT medium pass
Psem4413130205300 Phenylpropanoid HCT medium pass
Psem4422070214560 Phenylpropanoid HCT medium pass
Psem4424050216720 Phenylpropanoid HCT medium pass
Psem4434010227780 Phenylpropanoid HCT medium pass
Psem4451640251570 Phenylpropanoid HCT medium pass
Psem4455690257130 Phenylpropanoid HCT medium pass
Psem4960297030 Phenylpropanoid HCT medium pass
Psem6250302040 Phenylpropanoid HCT low borderline
Psem6270302080 Phenylpropanoid HCT medium pass
Psem6270302100 Phenylpropanoid HCT medium pass
Psem7350305460 Phenylpropanoid HCT medium pass
Psem8240309610 Phenylpropanoid HCT low borderline
Psem8630310850 Phenylpropanoid HCT medium pass
Psem2970029290 Phenylpropanoid LAC medium pass
Psem2970029300 Phenylpropanoid LAC medium pass
Psem2970029310 Phenylpropanoid LAC medium pass
Psem3242760036750 Phenylpropanoid LAC medium pass
Psem3500053150 Phenylpropanoid LAC medium pass
Psem3790064800 Phenylpropanoid LAC medium pass
Psem3974790091870 Phenylpropanoid LAC low borderline
Psem4076000106170 Phenylpropanoid LAC medium pass
Psem4120890118130 Phenylpropanoid LAC medium pass
Psem4188540122880 Phenylpropanoid LAC medium pass
Psem4221860127250 Phenylpropanoid LAC medium pass
Psem4421430213780 Phenylpropanoid LAC medium pass
Psem4437060231270 Phenylpropanoid LAC medium pass
Psem4444610241250 Phenylpropanoid LAC medium pass
Psem2862940017910 Phenylpropanoid PAL medium pass