PlantSME Plant secondary metabolism enzyme database

Quercus suber (quercus_suber)

Imported from atlas release summary for Quercus suber.

3724
Candidate Protein Records
3176
Pathway-Level Records
7645
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 27.39% Alkaloid pathway 24.69% Phenylpropanoid pathway 18.89% Flavonoid pathway 13.76% Rosmarinic acid pathway 8.12% Steroid pathway 7.15%
Family Distribution
C4H 5.78% 4CL 5.77% C3'H/CYP98A 5.74% BAHD 4.91% UGT 4.6% UFGT 4.33% 7DLGT 4.3% IFS 3.56%
Other Families 61.01%
More Families (97)
POD 271 3.54% T3O 265 3.47% CYP76 262 3.43% DWF4/CYP90B1 194 2.54% TRI/TRII 163 2.13% F3H 152 1.99% NMT 149 1.95% CAD 147 1.92% GS 135 1.77% STR 130 1.7% F3'H/CYP75B 129 1.69% BR6OX2/CYP85A2 119 1.56% CAS 116 1.52% SMT1/SMT2/SMT3 115 1.5% IFR 105 1.37% SGD 101 1.32% CYP71 97 1.27% CODM/T6ODM 89 1.16% LAC 81 1.06% HCT 75 0.98% H6H 74 0.97% COMT 72 0.94% FNS 61 0.8% TPS 56 0.73% TAT 54 0.71% ANR 53 0.69% GES 52 0.68% BR6OX1/CYP85A1 52 0.68% PMT 50 0.65% T16H 46 0.6% 16OMT 46 0.6% IO 45 0.59% CSE 45 0.59% CYP90D1 44 0.58% NCS 43 0.56% SLS 42 0.55% CNMT 42 0.55% RAS 42 0.55% G8O/G8H 40 0.52% PYKS 40 0.52% F3'5'H/CYP75A 39 0.51% 7DLH 38 0.5% LAMT 37 0.48% 8HGO 35 0.46% CCR 34 0.44% BBE 30 0.39% COR 28 0.37% CYP51G1 28 0.37% CCoAOMT 25 0.33% CYP719 23 0.3% FPPS 23 0.3% F5H/CYP84A 22 0.29% MPO 21 0.27% PAL 21 0.27% HPPR 21 0.27% AACT 21 0.27% TYDC_DDC 20 0.26% DFR 19 0.25% CPD/CYP90A1 19 0.25% ROT3/CYP90C1 19 0.25% GGPPS 19 0.25% CPR 18 0.24% SQS/FDFT1 16 0.21% ISY 15 0.2% ANS/LDOX 13 0.17% CYP80F1 11 0.14% CHS 9 0.12% SQE 9 0.12% MCT/IspD 9 0.12% DXS 9 0.12% TDC 8 0.1% MVD 8 0.1% CYP80B1 7 0.09% HYD1 7 0.09% MVK 7 0.09% 6OMT_4OMT_SOMT 6 0.08% DWF1 6 0.08% SMO1/SMO2 6 0.08% HDR/IspH 6 0.08% PMK 6 0.08% DET2 5 0.07% IDI 5 0.07% HMGR 5 0.07% HMGS 5 0.07% ODC 4 0.05% CHI 4 0.05% DXR 4 0.05% XMT_MXMT_DXMT 3 0.04% DWF7 3 0.04% FLS 2 0.03% FK 2 0.03% DWF5 2 0.03% CPI1 2 0.03% CMK/IspE 2 0.03% HDS/IspG 2 0.03% ADC 1 0.01% MDS/IspF 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 870 19 UGT (335) View species results
Alkaloid pathway 784 23 7DLGT (174) View species results
Phenylpropanoid pathway 600 12 POD (257) View species results
Flavonoid pathway 437 12 UFGT (313) View species results
Rosmarinic acid pathway 258 7 C4H (101) View species results
Steroid pathway 227 12 CAS (112) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2694 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 492 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Protein/Isoform Record Pathway Family Confidence Status Best Target
XP_023917386.1 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
XP_023917844.1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
XP_023918037.1 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
XP_023918038.1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
XP_023918040.1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
XP_023920221.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
XP_023920227.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
XP_023920491.1 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
XP_023922923.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
XP_023925726.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
XP_023926644.1 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
XP_023926645.1 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
XP_023927872.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
XP_023928531.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
XP_023928576.1 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
XP_023928680.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA