Quercus suber (quercus_suber)
Imported from atlas release summary for Quercus suber.
3176
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3176
Candidate Genes
C4H
5.78%
4CL
5.77%
C3'H/CYP98A
5.74%
BAHD
4.91%
UGT
4.6%
UFGT
4.33%
7DLGT
4.3%
IFS
3.56%
Other Families
61.01%
More Families (97)
POD
271
3.54%
T3O
265
3.47%
CYP76
262
3.43%
DWF4/CYP90B1
194
2.54%
TRI/TRII
163
2.13%
F3H
152
1.99%
NMT
149
1.95%
CAD
147
1.92%
GS
135
1.77%
STR
130
1.7%
F3'H/CYP75B
129
1.69%
BR6OX2/CYP85A2
119
1.56%
CAS
116
1.52%
SMT1/SMT2/SMT3
115
1.5%
IFR
105
1.37%
SGD
101
1.32%
CYP71
97
1.27%
CODM/T6ODM
89
1.16%
LAC
81
1.06%
HCT
75
0.98%
H6H
74
0.97%
COMT
72
0.94%
FNS
61
0.8%
TPS
56
0.73%
TAT
54
0.71%
ANR
53
0.69%
GES
52
0.68%
BR6OX1/CYP85A1
52
0.68%
PMT
50
0.65%
T16H
46
0.6%
16OMT
46
0.6%
IO
45
0.59%
CSE
45
0.59%
CYP90D1
44
0.58%
NCS
43
0.56%
SLS
42
0.55%
CNMT
42
0.55%
RAS
42
0.55%
G8O/G8H
40
0.52%
PYKS
40
0.52%
F3'5'H/CYP75A
39
0.51%
7DLH
38
0.5%
LAMT
37
0.48%
8HGO
35
0.46%
CCR
34
0.44%
BBE
30
0.39%
COR
28
0.37%
CYP51G1
28
0.37%
CCoAOMT
25
0.33%
CYP719
23
0.3%
FPPS
23
0.3%
F5H/CYP84A
22
0.29%
MPO
21
0.27%
PAL
21
0.27%
HPPR
21
0.27%
AACT
21
0.27%
TYDC_DDC
20
0.26%
DFR
19
0.25%
CPD/CYP90A1
19
0.25%
ROT3/CYP90C1
19
0.25%
GGPPS
19
0.25%
CPR
18
0.24%
SQS/FDFT1
16
0.21%
ISY
15
0.2%
ANS/LDOX
13
0.17%
CYP80F1
11
0.14%
CHS
9
0.12%
SQE
9
0.12%
MCT/IspD
9
0.12%
DXS
9
0.12%
TDC
8
0.1%
MVD
8
0.1%
CYP80B1
7
0.09%
HYD1
7
0.09%
MVK
7
0.09%
6OMT_4OMT_SOMT
6
0.08%
DWF1
6
0.08%
SMO1/SMO2
6
0.08%
HDR/IspH
6
0.08%
PMK
6
0.08%
DET2
5
0.07%
IDI
5
0.07%
HMGR
5
0.07%
HMGS
5
0.07%
ODC
4
0.05%
CHI
4
0.05%
DXR
4
0.05%
XMT_MXMT_DXMT
3
0.04%
DWF7
3
0.04%
FLS
2
0.03%
FK
2
0.03%
DWF5
2
0.03%
CPI1
2
0.03%
CMK/IspE
2
0.03%
HDS/IspG
2
0.03%
ADC
1
0.01%
MDS/IspF
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 870 | 19 | UGT (335) | View species results |
| Alkaloid pathway | 784 | 23 | 7DLGT (174) | View species results |
| Phenylpropanoid pathway | 600 | 12 | POD (257) | View species results |
| Flavonoid pathway | 437 | 12 | UFGT (313) | View species results |
| Rosmarinic acid pathway | 258 | 7 | C4H (101) | View species results |
| Steroid pathway | 227 | 12 | CAS (112) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2694 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 492 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| XP_023870398.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| XP_023873323.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| XP_023876953.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| XP_023879238.1 | Alkaloid | NCS | medium | pass | NCS__00004__sp_Q4QTJ2_NCS1_PAPSO |
| XP_023879239.1 | Alkaloid | NCS | medium | pass | NCS__00005__sp_Q67A25_NCS_THLFG |
| XP_023885201.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| XP_023886956.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023888875.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| XP_023891189.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| XP_023891190.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| XP_023892173.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| XP_023892623.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| XP_023894043.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023894176.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| XP_023894656.1 | Alkaloid | NCS | medium | pass | NCS__00004__sp_Q4QTJ2_NCS1_PAPSO |
| XP_023894693.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023897456.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| XP_023899126.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023900731.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| XP_023904950.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023907240.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023912452.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023914185.1 | Alkaloid | NCS | medium | pass | NCS__00005__sp_Q67A25_NCS_THLFG |
| XP_023914318.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023916926.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023916934.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023916940.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023916968.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023916979.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023917002.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023917014.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023917043.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023920555.1 | Alkaloid | NCS | medium | pass | NCS__00005__sp_Q67A25_NCS_THLFG |
| XP_023920556.1 | Alkaloid | NCS | medium | pass | NCS__00005__sp_Q67A25_NCS_THLFG |
| XP_023921582.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| XP_023921981.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023921983.1 | Alkaloid | NCS | medium | pass | NCS__00005__sp_Q67A25_NCS_THLFG |
| XP_023921984.1 | Alkaloid | NCS | medium | pass | NCS__00005__sp_Q67A25_NCS_THLFG |
| XP_023921985.1 | Alkaloid | NCS | medium | pass | NCS__00005__sp_Q67A25_NCS_THLFG |
| XP_023921986.1 | Alkaloid | NCS | medium | pass | NCS__00005__sp_Q67A25_NCS_THLFG |
| XP_023922058.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| XP_023925279.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| XP_023926700.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |