PlantSME Plant secondary metabolism enzyme database

Quercus suber (quercus_suber)

Imported from atlas release summary for Quercus suber.

3176
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.39% Alkaloid pathway 24.69% Phenylpropanoid pathway 18.89% Flavonoid pathway 13.76% Rosmarinic acid pathway 8.12% Steroid pathway 7.15%
Family Distribution
C4H 5.78% 4CL 5.77% C3'H/CYP98A 5.74% BAHD 4.91% UGT 4.6% UFGT 4.33% 7DLGT 4.3% IFS 3.56%
Other Families 61.01%
More Families (97)
POD 271 3.54% T3O 265 3.47% CYP76 262 3.43% DWF4/CYP90B1 194 2.54% TRI/TRII 163 2.13% F3H 152 1.99% NMT 149 1.95% CAD 147 1.92% GS 135 1.77% STR 130 1.7% F3'H/CYP75B 129 1.69% BR6OX2/CYP85A2 119 1.56% CAS 116 1.52% SMT1/SMT2/SMT3 115 1.5% IFR 105 1.37% SGD 101 1.32% CYP71 97 1.27% CODM/T6ODM 89 1.16% LAC 81 1.06% HCT 75 0.98% H6H 74 0.97% COMT 72 0.94% FNS 61 0.8% TPS 56 0.73% TAT 54 0.71% ANR 53 0.69% GES 52 0.68% BR6OX1/CYP85A1 52 0.68% PMT 50 0.65% T16H 46 0.6% 16OMT 46 0.6% IO 45 0.59% CSE 45 0.59% CYP90D1 44 0.58% NCS 43 0.56% SLS 42 0.55% CNMT 42 0.55% RAS 42 0.55% G8O/G8H 40 0.52% PYKS 40 0.52% F3'5'H/CYP75A 39 0.51% 7DLH 38 0.5% LAMT 37 0.48% 8HGO 35 0.46% CCR 34 0.44% BBE 30 0.39% COR 28 0.37% CYP51G1 28 0.37% CCoAOMT 25 0.33% CYP719 23 0.3% FPPS 23 0.3% F5H/CYP84A 22 0.29% MPO 21 0.27% PAL 21 0.27% HPPR 21 0.27% AACT 21 0.27% TYDC_DDC 20 0.26% DFR 19 0.25% CPD/CYP90A1 19 0.25% ROT3/CYP90C1 19 0.25% GGPPS 19 0.25% CPR 18 0.24% SQS/FDFT1 16 0.21% ISY 15 0.2% ANS/LDOX 13 0.17% CYP80F1 11 0.14% CHS 9 0.12% SQE 9 0.12% MCT/IspD 9 0.12% DXS 9 0.12% TDC 8 0.1% MVD 8 0.1% CYP80B1 7 0.09% HYD1 7 0.09% MVK 7 0.09% 6OMT_4OMT_SOMT 6 0.08% DWF1 6 0.08% SMO1/SMO2 6 0.08% HDR/IspH 6 0.08% PMK 6 0.08% DET2 5 0.07% IDI 5 0.07% HMGR 5 0.07% HMGS 5 0.07% ODC 4 0.05% CHI 4 0.05% DXR 4 0.05% XMT_MXMT_DXMT 3 0.04% DWF7 3 0.04% FLS 2 0.03% FK 2 0.03% DWF5 2 0.03% CPI1 2 0.03% CMK/IspE 2 0.03% HDS/IspG 2 0.03% ADC 1 0.01% MDS/IspF 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 870 19 UGT (335) View species results
Alkaloid pathway 784 23 7DLGT (174) View species results
Phenylpropanoid pathway 600 12 POD (257) View species results
Flavonoid pathway 437 12 UFGT (313) View species results
Rosmarinic acid pathway 258 7 C4H (101) View species results
Steroid pathway 227 12 CAS (112) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2694 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 492 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
XP_023921766.1 Alkaloid TRI/TRII low borderline TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
XP_023921901.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
XP_023922529.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
XP_023922558.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
XP_023922954.1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
XP_023923676.1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
XP_023924378.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
XP_023925243.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
XP_023925858.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
XP_023926479.1 Alkaloid TRI/TRII low borderline TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
XP_023927490.1 Alkaloid TRI/TRII medium pass TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH
XP_023927538.1 Alkaloid TRI/TRII medium pass TRI_TRII__00005__sp_P50162_TRN1_DATST
XP_023929237.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB