PlantSME Plant secondary metabolism enzyme database

Rhynchospora breviuscula (rhynchospora_breviuscula)

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Imported from atlas release summary for Rhynchospora breviuscula.

1461
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.39% Terpenoid pathway 24.44% Alkaloid pathway 22.66% Flavonoid pathway 15.13% Rosmarinic acid pathway 8.42% Steroid pathway 3.97%
Family Distribution
C3'H/CYP98A 6.16% C4H 6.07% BAHD 5.08% 4CL 4.96% POD 4.69% T3O 4.07% UGT 3.98% UFGT 3.8%
Other Families 61.18%
More Families (94)
7DLGT 126 3.77% IFS 113 3.38% CYP76 102 3.05% DWF4/CYP90B1 85 2.54% F3H 78 2.33% F3'H/CYP75B 69 2.06% CSE 68 2.03% BR6OX2/CYP85A2 68 2.03% NMT 64 1.91% PYKS 61 1.82% CYP71 61 1.82% STR 53 1.58% CAD 47 1.41% COMT 44 1.32% SMT1/SMT2/SMT3 42 1.26% TRI/TRII 41 1.23% 16OMT 40 1.2% CHS 40 1.2% H6H 38 1.14% IFR 36 1.08% CODM/T6ODM 35 1.05% GS 35 1.05% ANR 32 0.96% LAC 31 0.93% SGD 30 0.9% HCT 29 0.87% RAS 29 0.87% PMT 28 0.84% CAS 26 0.78% CYP90D1 24 0.72% TPS 23 0.69% SLS 22 0.66% T16H 22 0.66% IO 21 0.63% GES 21 0.63% COR 20 0.6% FNS 18 0.54% CCR 17 0.51% NCS 16 0.48% TAT 16 0.48% F3'5'H/CYP75A 15 0.45% PAL 15 0.45% CYP51G1 15 0.45% AACT 13 0.39% 8HGO 11 0.33% F5H/CYP84A 11 0.33% 7DLH 10 0.3% G8O/G8H 9 0.27% FPPS 9 0.27% CNMT 8 0.24% BBE 8 0.24% CPD/CYP90A1 8 0.24% LAMT 7 0.21% BR6OX1/CYP85A1 7 0.21% CCoAOMT 6 0.18% CPR 6 0.18% HPPR 6 0.18% ROT3/CYP90C1 6 0.18% DXS 6 0.18% GGPPS 6 0.18% MVD 6 0.18% CYP719 5 0.15% MPO 5 0.15% CHI 5 0.15% DFR 5 0.15% MVK 5 0.15% TYDC_DDC 4 0.12% ANS/LDOX 4 0.12% SQS/FDFT1 4 0.12% SQE 4 0.12% DET2 4 0.12% HMGR 4 0.12% MCT/IspD 4 0.12% CYP80B1 3 0.09% ISY 3 0.09% TDC 3 0.09% PMK 3 0.09% 6OMT_4OMT_SOMT 2 0.06% FLS 2 0.06% FK 2 0.06% CMK/IspE 2 0.06% HDR/IspH 2 0.06% XMT_MXMT_DXMT 1 0.03% ADC 1 0.03% SMO1/SMO2 1 0.03% DWF7 1 0.03% CPI1 1 0.03% DWF5 1 0.03% DWF1 1 0.03% MDS/IspF 1 0.03% DXR 1 0.03% HDS/IspG 1 0.03% IDI 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 371 12 POD (154) View species results
Terpenoid pathway 357 20 BAHD (128) View species results
Alkaloid pathway 331 20 7DLGT (62) View species results
Flavonoid pathway 221 8 UFGT (121) View species results
Rosmarinic acid pathway 123 7 C4H (53) View species results
Steroid pathway 58 10 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
rhynchospora_breviuscula_mRNA834 Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
rhynchospora_breviuscula_mRNA8343 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
rhynchospora_breviuscula_mRNA8482 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
rhynchospora_breviuscula_mRNA8571 Alkaloid NMT low borderline NMT__00040__sp_Q84WW6_ASHH1_ARATH
rhynchospora_breviuscula_mRNA8572 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
rhynchospora_breviuscula_mRNA8588 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
rhynchospora_breviuscula_mRNA8655 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
rhynchospora_breviuscula_mRNA9080 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
rhynchospora_breviuscula_mRNA9081 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
rhynchospora_breviuscula_mRNA9426 Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
rhynchospora_breviuscula_mRNA95 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
rhynchospora_breviuscula_mRNA9714 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
rhynchospora_breviuscula_mRNA9719 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
rhynchospora_breviuscula_mRNA9996 Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI