PlantSME Plant secondary metabolism enzyme database

Rhynchospora breviuscula (rhynchospora_breviuscula)

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Imported from atlas release summary for Rhynchospora breviuscula.

1607
Candidate Protein Records
1461
Pathway-Level Records
3344
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 371 12 POD (154) View species results
Terpenoid pathway 357 20 BAHD (128) View species results
Alkaloid pathway 331 20 7DLGT (62) View species results
Flavonoid pathway 221 8 UFGT (121) View species results
Rosmarinic acid pathway 123 7 C4H (53) View species results
Steroid pathway 58 10 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_breviuscula_mRNA4378 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA438 Alkaloid T3O medium pass
rhynchospora_breviuscula_mRNA4499 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA5102 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA5104 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA5105 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA5106 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA5107 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA5110 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA5111 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA5154 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA5155 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA5483 Alkaloid T3O low borderline
rhynchospora_breviuscula_mRNA5618 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA6189 Alkaloid T3O low borderline
rhynchospora_breviuscula_mRNA6266 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA6826 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA6932 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA7926 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA7927 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA7929 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA8396 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA8397 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA8445 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA8634 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA8759 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA8911 Alkaloid T3O medium pass
rhynchospora_breviuscula_mRNA8922 Alkaloid T3O medium pass
rhynchospora_breviuscula_mRNA8923 Alkaloid T3O low borderline
rhynchospora_breviuscula_mRNA8978 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA8981 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA8983 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA8984 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA9609 Alkaloid T3O medium pass
rhynchospora_breviuscula_mRNA9840 Alkaloid T3O medium borderline
rhynchospora_breviuscula_mRNA9841 Alkaloid T3O medium borderline