PlantSME Plant secondary metabolism enzyme database

Rhynchospora breviuscula (rhynchospora_breviuscula)

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Imported from atlas release summary for Rhynchospora breviuscula.

1461
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 371 12 POD (154) View species results
Terpenoid pathway 357 20 BAHD (128) View species results
Alkaloid pathway 331 20 7DLGT (62) View species results
Flavonoid pathway 221 8 UFGT (121) View species results
Rosmarinic acid pathway 123 7 C4H (53) View species results
Steroid pathway 58 10 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
rhynchospora_breviuscula_mRNA12851 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA1303 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA13201 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA13202 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA13203 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA13204 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA13205 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA13209 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA13210 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA13211 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA13212 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA13213 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA14315 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA14316 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA14317 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA14590 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA14654 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA1545 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA1547 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA15803 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA1665 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA1670 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA1671 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA1672 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA16747 Flavonoid F3H medium pass
rhynchospora_breviuscula_mRNA16748 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA16749 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA16771 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA17252 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA17984 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA1820 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA18899 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA18976 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA19032 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA19270 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA19682 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA19683 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA19771 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA19920 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA2057 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA2058 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA20825 Flavonoid F3H medium pass
rhynchospora_breviuscula_mRNA24150 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA2674 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA2781 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA2782 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA2783 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA312 Flavonoid F3H medium borderline
rhynchospora_breviuscula_mRNA319 Flavonoid F3H low borderline
rhynchospora_breviuscula_mRNA3587 Flavonoid F3H medium pass