PlantSME Plant secondary metabolism enzyme database

Secale cereale (secale_cereale)

Imported from atlas release summary for Secale cereale.

3363
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 887 19 UGT (380) View species results
Phenylpropanoid pathway 764 12 POD (385) View species results
Alkaloid pathway 705 20 7DLGT (158) View species results
Flavonoid pathway 533 14 UFGT (361) View species results
Rosmarinic acid pathway 334 7 C4H (185) View species results
Steroid pathway 140 13 SMT1/SMT2/SMT3 (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3774 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Scer01G0009220.1 Flavonoid 4CL low borderline
Scer01G0024440.1 Flavonoid 4CL medium pass
Scer01G0024540.1 Flavonoid 4CL medium pass
Scer01G0035700.1 Flavonoid 4CL medium pass
Scer01G0051750.1 Flavonoid 4CL medium pass
Scer02G0000590.1 Flavonoid 4CL medium pass
Scer02G0013840.1 Flavonoid 4CL medium pass
Scer02G0013860.1 Flavonoid 4CL medium pass
Scer02G0028590.1 Flavonoid 4CL medium pass
Scer02G0031580.1 Flavonoid 4CL low borderline
Scer02G0045360.1 Flavonoid 4CL medium pass
Scer02G0053570.1 Flavonoid 4CL medium pass
Scer02G0055360.1 Flavonoid 4CL medium pass
Scer02G0061830.1 Flavonoid 4CL medium pass
Scer02G0061940.1 Flavonoid 4CL medium pass
Scer02G0061990.1 Flavonoid 4CL medium pass
Scer02G0062520.1 Flavonoid 4CL medium pass
Scer02G0063570.1 Flavonoid 4CL medium pass
Scer02G0064130.1 Flavonoid 4CL medium pass
Scer02G0064450.1 Flavonoid 4CL medium pass
Scer02G0064470.1 Flavonoid 4CL medium pass
Scer03G0018510.1 Flavonoid 4CL medium pass
Scer03G0030860.1 Flavonoid 4CL low borderline
Scer03G0030880.1 Flavonoid 4CL low borderline
Scer03G0031790.1 Flavonoid 4CL medium pass
Scer03G0037330.1 Flavonoid 4CL low borderline
Scer03G0046470.1 Flavonoid 4CL medium pass
Scer03G0046480.1 Flavonoid 4CL medium pass
Scer04G0008480.1 Flavonoid 4CL medium pass
Scer04G0008490.1 Flavonoid 4CL medium pass
Scer04G0008520.1 Flavonoid 4CL medium pass
Scer04G0011200.1 Flavonoid 4CL medium pass
Scer04G0011210.1 Flavonoid 4CL medium pass
Scer04G0013220.1 Flavonoid 4CL low borderline
Scer04G0016000.1 Flavonoid 4CL low borderline
Scer04G0028470.1 Flavonoid 4CL medium pass
Scer04G0043050.1 Flavonoid 4CL low borderline
Scer04G0055400.1 Flavonoid 4CL medium pass
Scer04G0055440.1 Flavonoid 4CL medium pass
Scer05G0012360.1 Flavonoid 4CL low borderline
Scer05G0013460.1 Flavonoid 4CL low borderline
Scer05G0014990.1 Flavonoid 4CL low borderline
Scer05G0015740.1 Flavonoid 4CL low borderline
Scer05G0017130.1 Flavonoid 4CL low borderline
Scer05G0017490.1 Flavonoid 4CL low borderline
Scer05G0020350.1 Flavonoid 4CL low borderline
Scer05G0036700.1 Flavonoid 4CL low borderline
Scer05G0037860.1 Flavonoid 4CL medium pass
Scer05G0038920.1 Flavonoid 4CL medium pass
Scer05G0039500.1 Flavonoid 4CL medium pass