PlantSME Plant secondary metabolism enzyme database

Secale cereale (secale_cereale)

Imported from atlas release summary for Secale cereale.

3363
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 887 19 UGT (380) View species results
Phenylpropanoid pathway 764 12 POD (385) View species results
Alkaloid pathway 705 20 7DLGT (158) View species results
Flavonoid pathway 533 14 UFGT (361) View species results
Rosmarinic acid pathway 334 7 C4H (185) View species results
Steroid pathway 140 13 SMT1/SMT2/SMT3 (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3774 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Scer05G0040220.1 Flavonoid 4CL medium pass
Scer05G0045720.1 Flavonoid 4CL low borderline
Scer05G0051430.1 Flavonoid 4CL medium pass
Scer05G0053860.1 Flavonoid 4CL medium pass
Scer05G0053870.1 Flavonoid 4CL medium pass
Scer05G0054040.1 Flavonoid 4CL medium pass
Scer05G0054160.1 Flavonoid 4CL medium pass
Scer05G0054170.1 Flavonoid 4CL medium pass
Scer05G0054350.1 Flavonoid 4CL medium pass
Scer05G0057870.1 Flavonoid 4CL medium pass
Scer06G0000030.1 Flavonoid 4CL medium pass
Scer06G0007730.1 Flavonoid 4CL medium pass
Scer06G0007750.1 Flavonoid 4CL medium pass
Scer06G0021800.1 Flavonoid 4CL medium pass
Scer06G0025560.1 Flavonoid 4CL medium pass
Scer06G0033840.1 Flavonoid 4CL low borderline
Scer06G0038990.1 Flavonoid 4CL medium pass
Scer07G0003730.1 Flavonoid 4CL low borderline
Scer07G0003740.1 Flavonoid 4CL low borderline
Scer07G0013340.1 Flavonoid 4CL medium pass
Scer07G0022640.1 Flavonoid 4CL medium pass
Scer07G0022650.1 Flavonoid 4CL medium pass
Scer07G0028680.1 Flavonoid 4CL low borderline
ScerGWHASIY000000080003270.1 Flavonoid 4CL medium pass
ScerGWHASIY000000080004210.1 Flavonoid 4CL low borderline
ScerGWHASIY000000080006780.1 Flavonoid 4CL medium pass
ScerGWHASIY000000080016290.1 Flavonoid 4CL low borderline
ScerGWHASIY000000080017060.1 Flavonoid 4CL medium pass
Scer01G0000390.1 Flavonoid ANR medium borderline
Scer01G0024180.1 Flavonoid ANR low borderline
Scer01G0024210.1 Flavonoid ANR low borderline
Scer01G0026090.1 Flavonoid ANR low borderline
Scer01G0026930.1 Flavonoid ANR medium borderline
Scer01G0053630.1 Flavonoid ANR low borderline
Scer02G0002380.1 Flavonoid ANR medium borderline
Scer02G0002390.1 Flavonoid ANR medium borderline
Scer02G0019730.1 Flavonoid ANR medium borderline
Scer02G0019740.1 Flavonoid ANR medium borderline
Scer02G0043380.1 Flavonoid ANR medium borderline
Scer02G0045430.1 Flavonoid ANR medium borderline
Scer02G0045440.1 Flavonoid ANR medium borderline
Scer02G0051490.1 Flavonoid ANR medium borderline
Scer02G0051800.1 Flavonoid ANR medium borderline
Scer02G0051810.1 Flavonoid ANR medium borderline
Scer02G0051830.1 Flavonoid ANR medium borderline
Scer02G0051850.1 Flavonoid ANR medium borderline
Scer02G0051880.1 Flavonoid ANR medium borderline
Scer02G0051900.1 Flavonoid ANR medium borderline
Scer02G0052100.1 Flavonoid ANR medium borderline
Scer02G0052110.1 Flavonoid ANR medium borderline