PlantSME Plant secondary metabolism enzyme database

Secale cereale (secale_cereale)

Imported from atlas release summary for Secale cereale.

3363
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 887 19 UGT (380) View species results
Phenylpropanoid pathway 764 12 POD (385) View species results
Alkaloid pathway 705 20 7DLGT (158) View species results
Flavonoid pathway 533 14 UFGT (361) View species results
Rosmarinic acid pathway 334 7 C4H (185) View species results
Steroid pathway 140 13 SMT1/SMT2/SMT3 (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3774 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Scer02G0052120.1 Flavonoid ANR medium borderline
Scer02G0063610.1 Flavonoid ANR medium borderline
Scer02G0064250.1 Flavonoid ANR medium borderline
Scer03G0004260.1 Flavonoid ANR medium borderline
Scer03G0010150.1 Flavonoid ANR medium borderline
Scer03G0030130.1 Flavonoid ANR medium borderline
Scer03G0030230.1 Flavonoid ANR low borderline
Scer04G0015890.1 Flavonoid ANR low borderline
Scer04G0018800.1 Flavonoid ANR low borderline
Scer05G0005570.1 Flavonoid ANR medium borderline
Scer05G0005610.1 Flavonoid ANR medium borderline
Scer05G0005810.1 Flavonoid ANR medium borderline
Scer05G0023360.1 Flavonoid ANR medium borderline
Scer05G0023370.1 Flavonoid ANR medium borderline
Scer05G0028710.1 Flavonoid ANR high pass
Scer05G0028720.1 Flavonoid ANR low borderline
Scer05G0041630.1 Flavonoid ANR medium borderline
Scer05G0056420.1 Flavonoid ANR medium borderline
Scer05G0060260.1 Flavonoid ANR medium borderline
Scer05G0066680.1 Flavonoid ANR medium pass
Scer06G0057390.1 Flavonoid ANR low borderline
Scer06G0057410.1 Flavonoid ANR low borderline
Scer06G0057460.1 Flavonoid ANR low borderline
Scer07G0007600.1 Flavonoid ANR medium borderline
Scer07G0007620.1 Flavonoid ANR medium borderline
Scer07G0030840.1 Flavonoid ANR medium borderline
Scer07G0037870.1 Flavonoid ANR medium borderline
Scer07G0037890.1 Flavonoid ANR medium borderline
Scer07G0037920.1 Flavonoid ANR low borderline
Scer07G0038030.1 Flavonoid ANR medium borderline
Scer07G0038090.1 Flavonoid ANR medium borderline
Scer07G0045270.1 Flavonoid ANR medium borderline
Scer07G0052470.1 Flavonoid ANR medium borderline
ScerGWHASIY000000080005310.1 Flavonoid ANR medium pass
ScerGWHASIY000000080015240.1 Flavonoid ANR medium borderline
Scer02G0058440.1 Flavonoid ANS/LDOX medium borderline
Scer04G0035790.1 Flavonoid ANS/LDOX medium borderline
Scer04G0036000.1 Flavonoid ANS/LDOX medium borderline
Scer04G0036030.1 Flavonoid ANS/LDOX medium borderline
Scer04G0036040.1 Flavonoid ANS/LDOX medium borderline
Scer05G0048360.1 Flavonoid ANS/LDOX medium borderline
Scer05G0057480.1 Flavonoid ANS/LDOX medium borderline
Scer05G0057500.1 Flavonoid ANS/LDOX medium borderline
Scer05G0057510.1 Flavonoid ANS/LDOX medium borderline
Scer05G0065310.1 Flavonoid ANS/LDOX medium borderline
Scer06G0026910.1 Flavonoid ANS/LDOX medium borderline
Scer06G0032620.1 Flavonoid ANS/LDOX low borderline
Scer06G0032780.1 Flavonoid ANS/LDOX low borderline
Scer06G0038110.1 Flavonoid ANS/LDOX medium borderline
Scer06G0039610.1 Flavonoid ANS/LDOX medium borderline